RNA-seq of a Leigh Syndrome patient blood being treated with Omaveloxolone

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.

Also filed as BioProject PRJNA1310465 and SRA study SRP612382. Searching any of these in the dataset finder brings you back here.

Supports a between-group comparison across 24 samples.

How we read this: 8 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.

• GSM9197262 Pre-treated blood, replicate 1 Pre-treated blood,
• GSM9197263 Pre-treated blood, replicate 2 Pre-treated blood,
• GSM9197264 Pre-treated blood, replicate 3 Pre-treated blood,
• GSM9197265 Blood from patient 1 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 1 Blood from patient 1 mo…
• GSM9197266 Blood from patient 1 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 2 Blood from patient 1 mo…
• GSM9197267 Blood from patient 1 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 3 Blood from patient 1 mo…
• GSM9197268 Blood from patient 2 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 1 Blood from patient 2 mo…
• GSM9197269 Blood from patient 2 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 2 Blood from patient 2 mo…
• GSM9197270 Blood from patient 2 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 3 Blood from patient 2 mo…
• GSM9197271 Blood from patient 4 month post-treatment with Omaveloxolone at a dose of 50 mg PO daily, replicate 1 Blood from patient 4 mo…
• GSM9197272 Blood from patient 4 month post-treatment with Omaveloxolone at a dose of 50 mg PO daily, replicate 2 Blood from patient 4 mo…
• GSM9197273 Blood from patient 4 month post-treatment with Omaveloxolone at a dose of 50 mg PO daily, replicate 3 Blood from patient 4 mo…
• GSM9197274 Blood from patient 5 month post-treatment with Omaveloxolone at a dose of 50 mg PO daily, replicate 1 Blood from patient 5 mo…
• GSM9197275 Blood from patient 5 month post-treatment with Omaveloxolone at a dose of 50 mg PO daily, replicate 2 Blood from patient 5 mo…
• GSM9197276 Blood from patient 5 month post-treatment with Omaveloxolone at a dose of 50 mg PO daily, replicate 3 Blood from patient 5 mo…
• GSM9197277 Blood from patient 7 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 1 Blood from patient 7 mo…
• GSM9197278 Blood from patient 7 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 2 Blood from patient 7 mo…
• GSM9197279 Blood from patient 7 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 3 Blood from patient 7 mo…
• GSM9197280 Blood from patient 9 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 1 Blood from patient 9 mo…
• GSM9197281 Blood from patient 9 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 2 Blood from patient 9 mo…
• GSM9197282 Blood from patient 9 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 3 Blood from patient 9 mo…
• GSM9197283 Blood from patient 10 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 1 Blood from patient 10 m…
• GSM9197284 Blood from patient 10 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 2 Blood from patient 10 m…
• GSM9197285 Blood from patient 10 month post-treatment with Omaveloxolone at a dose of 100 mg PO daily, replicate 3 Blood from patient 10 m…

• GSE251778 Sex-specific and multiomic integration enhance accuracy of peripheral blood biomarkers of major depressive disorder [RNA-Seq] 169 samples shares rna-seq, blood
• GSE327707 Sorted bulk RNA-seq profiling of human peripheral blood mononuclear cell populations across diverse in vitro immune stimuli 150 samples shares rna-seq, blood
• GSE334923 Single-cell RNA-seq atlas of peripheral blood and kidney graft immune cells in chronic antibody-mediated rejection 48 samples shares rna-seq, blood
• GSE296117 A single-cell RNA-seq dataset of synovial fluid from rheumatoid arthritis treated with TNF-α/JAK inhibitor 18 samples shares rna-seq, treated
• GSE300475 Single cell RNA sequencing for longitudinal human peripheral blood from HR+ breast cancer patients treated with immunotherapy 32 samples shares treated, blood
• GSE254176 Dynamic changes of immune cells in systemic lupus erythematosus with nephritis using longitudinal peripheral blood single-cell RNA-seq 57 samples shares rna-seq, blood
• GSE272409 Molecular and spatial analysis unveils the functional basis of tertiary lymphoid structures in Sjogren’s syndrome[scRNA-seq] 13 samples shares rna-seq
• GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples shares rna-seq

Search all human RNA-seq datasets in GEO →