Newly Evolved Endogenous Retroviruses Prime the Ovarian Reserve for Activation [RNA-seq]
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × WT_RNA-seq_E18O vs 3 × WT_RNA-seq_P1O vs 3 × WT_RNA-seq_NGO vs 3 × WT_RNA-seq_GOGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Newly Evolved Endogenous Retroviruses Prime the Ovarian Reserve for ActivationResearch square · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE306921_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1313926 and SRA study SRP616201. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9212526 WT_RNA-seq_E18O_rep1 WT_RNA-seq_E18O
- GSM9212527 WT_RNA-seq_E18O_rep2 WT_RNA-seq_E18O
- GSM9212528 WT_RNA-seq_E18O_rep3 WT_RNA-seq_E18O
- GSM9212529 WT_RNA-seq_P1O_rep1 WT_RNA-seq_P1O
- GSM9212530 WT_RNA-seq_P1O_rep2 WT_RNA-seq_P1O
- GSM9212531 WT_RNA-seq_P1O_rep3 WT_RNA-seq_P1O
- GSM9212532 WT_RNA-seq_NGO_rep1 WT_RNA-seq_NGO
- GSM9212533 WT_RNA-seq_NGO_rep2 WT_RNA-seq_NGO
- GSM9212534 WT_RNA-seq_NGO_rep3 WT_RNA-seq_NGO
- GSM9212535 WT_RNA-seq_GO_rep1 WT_RNA-seq_GO
- GSM9212536 WT_RNA-seq_GO_rep2 WT_RNA-seq_GO
- GSM9212537 WT_RNA-seq_GO_rep3 WT_RNA-seq_GO
- GSE243942 Spatio-temporal X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing [RNA-seq] 125 samples shares activation, rna-seq
- GSE296993 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation [RNA-seq of mESC] 50 samples shares activation, rna-seq
- GSE226579 Stem Cell Activity-Coupled Suppression of Endogenous Retrovirus Governs Adult Tissue Regeneration [RNA-seq] 47 samples shares endogenous, rna-seq
- GSE281467 Coactivation of innate immune suppressive cells induces acquired resistance against cancer immunotherapy targeting the innate immune system [TIICs RNA-seq] 30 samples shares activation, rna-seq
- GSE296992 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation [RNA-seq of early embryo] 26 samples shares activation, rna-seq
- GSE245648 The Heme-regulated transcriptional repressor, BACH1 safeguards macrophage enhancer selection, activation andtissue adaptation [RNA-seq_BMDM] 24 samples shares activation, rna-seq
- GSE293160 SKP1A-mediated degradation of PRC2 triggers activation of Polycomb-silenced gene [RNA-seq] 24 samples shares activation, rna-seq
- GSE274183 A novel noninvasive murine model of neonatal hypoxic ischemic encephalopathy demonstrates developmental delay and motor deficits with activation of inflammatory pathways in monocytes [scRNA-seq] 24 samples shares activation, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.