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Single cell and isoform-specific translational profiling of the mouse brain

GSE314176 Mus musculus (mouse) Single-cell RNA-seq 25 samples Submitted 2025/12/18 Platform GPL24247Platform GPL34585Platform GPL34475
At a glance

Single-cell RNA-seq · mouse · 25 samples

What it is
Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
Organism
Mus musculus (mouse)
Samples
25 samples: 9 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
Data you can get
A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Paper
Single-cell and isoform-specific translational profiling of the mouse brainNature · 2026
SuperSeries — this record groups several sub-series.
Summary (written by the submitters)
This SuperSeries is composed of the SubSeries listed below.
Published in
Single-cell and isoform-specific translational profiling of the mouse brain
Sison SL, Zampa F, Kofman ER et al. · Nature 2026 · PMID 41708856 · doi:10.1038/s41586-026-10118-1
This dataset
Open GSE314176 in finder → Find more mouse RNA-seq datasets →
Download · which file do I need?

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

Series matrix ↓
2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE314176_RAW.tar (it can run to tens of gigabytes).

All supplementary files ↗ Whole study · RAW.tar ↓
3 · Start from the raw reads

Raw sequencing reads

The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.

Raw reads on ENA ↗

What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.

Also filed as BioProject PRJNA1390205 and SRA study SRP530980. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 41708856) ↗
Study design
9 conditions, mostly in triplicate
48dox-RPS2-NT ×3 48dox-RPS2-B15 ×3 48dox-RPS2-B60 ×3 48dox-RPL10-NT ×3 48dox-RPL22-NT ×3 Short read scRNA-seq mouse hippocampus sequen… ×3 Long read scRNA-seq mouse hippocampus sequenc… ×3 RPS2-eCLIP-IP ×2 +1 more

Supports a between-group comparison across 25 samples.

How we read this: 9 replicated groups read from 25 sample titles; they account for 25 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.

Samples in this study
Datasets on a similar topic

Search all mouse RNA-seq datasets in GEO →

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