Cis-regulation of IL-22 gene in type 3 immune cells
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 16 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples: 8 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Cell type-specific enhancers regulate IL-22 expression in innate and adaptive type 3 lymphoid cellsNature communications · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE314532_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1217908 and SRA study SRP560935. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 8 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9401285 Ctrl_Rnx3_rep1 Ctrl_Rnx3
- GSM9401286 Ctrl_Rorc_rep1 Ctrl_Rorc
- GSM9401287 Ctrl_IgGMo_rep1 Ctrl_IgGMo
- GSM9401288 Ctrl_IgGRb_rep1 Ctrl_IgGRb
- GSM9401289 Stim_Rnx3_rep1 Stim_Rnx3
- GSM9401290 Stim_Rorc_rep1 Stim_Rorc
- GSM9401291 Stim_IgGMo_rep1 Stim_IgGMo
- GSM9401292 Stim_IgGRb_rep1 Stim_IgGRb
- GSM9401293 Ctrl_Rnx3_rep2 Ctrl_Rnx3
- GSM9401294 Ctrl_Rorc_rep2 Ctrl_Rorc
- GSM9401295 Ctrl_IgGMo_rep2 Ctrl_IgGMo
- GSM9401296 Ctrl_IgGRb_rep2 Ctrl_IgGRb
- GSM9401297 Stim_Rnx3_rep2 Stim_Rnx3
- GSM9401298 Stim_Rorc_rep2 Stim_Rorc
- GSM9401299 Stim_IgGMo_rep2 Stim_IgGMo
- GSM9401300 Stim_IgGRb_rep2 Stim_IgGRb
- GSE331488 A global view of cell-type-specific temporal dynamics in mammalian aging [I] 771 samples shares type
- GSE331489 A global view of cell-type-specific temporal dynamics in mammalian aging [II] 725 samples shares type
- GSE292063 Pre-existing epigenetic state and differential NF-kB activation shape type 2 immune cell responses 61 samples shares type
- GSE302070 Heterogeneity and Homogeneity in Treg responses to Interleukin-2 [RNAseq2: Differential activation of Immune cell types by IL2-Immunocytokines] 45 samples shares type
- GSE313359 Hippocampal estrogen levels, receptor types and epigenetics contribute to sex-specific memory-vulnerabilities to concurrent acute stresses [Cut & Run] 45 samples shares type
- GSE307127 Immune Receptor Lag3 Deletion Alleviates Neurodegeneration Phenotypes in a Mouse Model of Alzheimer’s Disease 36 samples shares type
- GSE272369 Cell-Type-Specific Epigenetic Priming of Gene Expression in Nucleus Accumbens by Cocaine 12 samples shares type
- GSE297048 EZH2 alters aggressive variant prostate cancer subtype evolution, but is not required for neuroendocrine prostate cancer [ChIP-seq] 40 samples shares type
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.