Abrogation of Oncogenic RAS Signaling by a RAS(ON) Inhibitor Doublet Primes Immune-refractory KRASG12C-mutant NSCLC for Immune Checkpoint Blockade
RNA-seq (gene expression) · human · 44 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Topic
- Lung cancerThis series is part of our curated briefing on it.
- Samples
- 44 samples: 12 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE315010_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1394784 and SRA study SRP658362. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 44 samples.
How we read this: 12 replicated groups read from 44 sample titles; they account for 44 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9420085 NCI-H2122_vehicle_24hour_rep1 NCI-H2122_vehicle_24hour
- GSM9420086 NCI-H2122_vehicle_24hour_rep2 NCI-H2122_vehicle_24hour
- GSM9420087 NCI-H2122_vehicle_24hour_rep3 NCI-H2122_vehicle_24hour
- GSM9420088 NCI-H2122_vehicle_8hour_rep1 NCI-H2122_vehicle_8hour
- GSM9420089 NCI-H2122_vehicle_8hour_rep2 NCI-H2122_vehicle_8hour
- GSM9420090 NCI-H2122_vehicle_8hour_rep3 NCI-H2122_vehicle_8hour
- GSM9420091 NCI-H2122_RMC-6291_24hour_rep1 NCI-H2122_RMC-6291_24ho…
- GSM9420092 NCI-H2122_RMC-6291_24hour_rep2 NCI-H2122_RMC-6291_24ho…
- GSM9420093 NCI-H2122_RMC-6291_24hour_rep3 NCI-H2122_RMC-6291_24ho…
- GSM9420094 NCI-H2122_RMC-6291_8hour_rep1 NCI-H2122_RMC-6291_8hour
- GSM9420095 NCI-H2122_RMC-6291_8hour_rep2 NCI-H2122_RMC-6291_8hour
- GSM9420096 NCI-H2122_RMC-6291_8hour_rep3 NCI-H2122_RMC-6291_8hour
- GSM9420097 NCI-H2122_RMC-6236_24hour_rep1 NCI-H2122_RMC-6236_24ho…
- GSM9420098 NCI-H2122_RMC-6236_24hour_rep2 NCI-H2122_RMC-6236_24ho…
- GSM9420099 NCI-H2122_RMC-6236_24hour_rep3 NCI-H2122_RMC-6236_24ho…
- GSM9420100 NCI-H2122_RMC-6236_8hour_rep1 NCI-H2122_RMC-6236_8hour
- GSM9420101 NCI-H2122_RMC-6236_8hour_rep2 NCI-H2122_RMC-6236_8hour
- GSM9420102 NCI-H2122_RMC-6236_8hour_rep3 NCI-H2122_RMC-6236_8hour
- GSM9420103 NCI-H2122_RMC-6291+RMC-6236_24hour_rep1 NCI-H2122_RMC-6291+RMC-…
- GSM9420104 NCI-H2122_RMC-6291+RMC-6236_24hour_rep2 NCI-H2122_RMC-6291+RMC-…
- GSM9420105 NCI-H2122_RMC-6291+RMC-6236_24hour_rep3 NCI-H2122_RMC-6291+RMC-…
- GSM9420106 NCI-H2122_RMC-6291+RMC-6236_8hour_rep1 NCI-H2122_RMC-6291+RMC-…
- GSM9420107 NCI-H2122_RMC-6291+RMC-6236_8hour_rep2 NCI-H2122_RMC-6291+RMC-…
- GSM9420108 NCI-H2122_RMC-6291+RMC-6236_8hour_rep3 NCI-H2122_RMC-6291+RMC-…
- GSM9420109 e3LL_vehicle_8day_rep1 e3LL_vehicle_8day
- GSM9420110 e3LL_vehicle_8day_rep2 e3LL_vehicle_8day
- GSM9420111 e3LL_vehicle_8day_rep3 e3LL_vehicle_8day
- GSM9420112 e3LL_vehicle_8day_rep4 e3LL_vehicle_8day
- GSM9420113 e3LL_vehicle_8day_rep5 e3LL_vehicle_8day
- GSM9420114 e3LL_RMC-6291_8day_rep1 e3LL_RMC-6291_8day
- GSM9420115 e3LL_RMC-6291_8day_rep2 e3LL_RMC-6291_8day
- GSM9420116 e3LL_RMC-6291_8day_rep3 e3LL_RMC-6291_8day
- GSM9420117 e3LL_RMC-6291_8day_rep4 e3LL_RMC-6291_8day
- GSM9420118 e3LL_RMC-6291_8day_rep5 e3LL_RMC-6291_8day
- GSM9420119 e3LL_RMC-6236_8day_rep1 e3LL_RMC-6236_8day
- GSM9420120 e3LL_RMC-6236_8day_rep2 e3LL_RMC-6236_8day
- GSM9420121 e3LL_RMC-6236_8day_rep3 e3LL_RMC-6236_8day
- GSM9420122 e3LL_RMC-6236_8day_rep4 e3LL_RMC-6236_8day
- GSM9420123 e3LL_RMC-6236_8day_rep5 e3LL_RMC-6236_8day
- GSM9420124 e3LL_RMC-6291+RMC-6236_8day_rep1 e3LL_RMC-6291+RMC-6236_…
+ 4 more — browse all 44 samples with per-sample file links →
- GSE104244 Bone Marrow Derived Macrophages, NSCLC cell lines, and Kras G12D Lung Tumors Treated with Epigenetic Agents 33 samples same disease briefing · shares nsclc, ras
- GSE117570 Reprogramming of Tumor-infiltrating Immune Cells in Early Stage of NSCLC 8 samples same disease briefing · shares nsclc
- GSE27389 Substitutions in the KRas oncogene determine protein behavior: Implications for signaling and clinical outcome. 22 samples same disease briefing · shares ras
- GSE127465 Single cell transcriptomics of human and mouse lung cancers reveals conserved myeloid populations across individuals and species 40 samples same disease briefing
- GSE103550 Lung Cancer Cell-Mediated Skeletal Muscle Mitochondrial Dysfunction is Mitigated by 1a,25-Dihydroxyvitamin D3 24 samples same disease briefing
- GSE241518 High-throughout sequencing of colorectal cancer and non-small cell lung cancer cells treated actived compound YHM18 4 samples same disease briefing
- GSE10072 Gene expression signature of cigarette smoking and its role in lung adenocarcinoma development and survival 107 samples same disease briefing
- GSE17958 Affymetrix SNP array data for 47 lung squamous cell carcinoma and 40 esophageal squamous cell carcinoma samples. 87 samples same disease briefing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.