Phase II proof-of-concept study of durvalumab and cediranib with and without olaparib in recurrent ovarian cancer
RNA-seq (gene expression) · human · 75 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Topic
- Ovarian cancerThis series is part of our curated briefing on it.
- Samples
- 75 samples: 75 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE318308_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1418576 and SRA study SRP674494. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 75 sample titles: 75 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9492107 p162_pre
- GSM9492108 p144_pre
- GSM9492109 p123_pre
- GSM9492110 p179_pre
- GSM9492111 p199_pre
- GSM9492112 p216_pre
- GSM9492113 p196_pre
- GSM9492114 p146_pre
- GSM9492115 p233_pre
- GSM9492116 p150_pre
- GSM9492117 p200_pre
- GSM9492118 p109_pre
- GSM9492119 p140_pre
- GSM9492120 p155_pre
- GSM9492121 p107_pre
- GSM9492122 p173_pre
- GSM9492123 p213_pre
- GSM9492124 p226_pre
- GSM9492125 p124_pre
- GSM9492126 p208_pre
- GSM9492127 p230_pre
- GSM9492128 p178_pre
- GSM9492129 p133_pre
- GSM9492130 p161_pre
- GSM9492131 p182_pre
- GSM9492132 p202_pre
- GSM9492133 p231_pre
- GSM9492134 p223_pre
- GSM9492135 p229_pre
- GSM9492136 p135_pre
- GSM9492137 p154_pre
- GSM9492138 p219_pre
- GSM9492139 p40_pre
- GSM9492140 p206_pre
- GSM9492141 p24_pre
- GSM9492142 p99_pre
- GSM9492143 p90_pre
- GSM9492144 p221_pre
- GSM9492145 p168_pre
- GSM9492146 p171_pre
+ 35 more — browse all 75 samples with per-sample file links →
- GSE268514 Integrative genomic analysis of Korean high-grade serous ovarian cancer 161 samples same disease briefing · shares ovarian
- GSE311212 Transcriptomic profiling in human ovarian cancer cell line OVCAR-3 following CDK2 inhibitor treatment 6 samples same disease briefing · shares ovarian
- GSE154600 Multi-omic analysis of subtype evolution and heterogeneity in high-grade serous ovarian carcinoma 5 samples same disease briefing · shares ovarian
- GSE128098 TET1 reprograms the epithelial ovarian cancer epigenome and reveals casein kinase 2α as a therapeutic target 4 samples same disease briefing · shares ovarian
- GSE57477 Molecular subtyping of serous ovarian tumors reveals multiple connections to intrinsic breast cancer subtypes 72 samples same disease briefing · shares ovarian
- GSE314300 Rb CUT&RUN profiling in ovarian cancer cell lines following CDK2 inhibitor treatment 10 samples same disease briefing · shares ovarian
- GSE135242 Hi-C identifies structural variation associated with resistance in paired patient-derived ovarian cancer models 8 samples same disease briefing · shares ovarian
- GSE28330 Telomeric Allelic Imbalance Indicates Defective DNA Repair and Sensitivity to DNA-Damaging Agents 107 samples same disease briefing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.