ATAC-seq of the granulopoiesis lineage from different organs
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 34 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 34 samples: 10 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Divergent granulopoiesis at extramedullary sites safeguards antibacterial host defenseScience immunology · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE318435_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1418729 and SRA study SRP674636. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 34 samples.
How we read this: 10 replicated groups read from 34 sample titles; they account for 34 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9494541 GMP,BM,rep1 GMP,BM,
- GSM9494542 GMP,BM,rep3 GMP,BM,
- GSM9494543 GMP,SP,rep3 GMP,SP,
- GSM9494544 GMP,SP,rep4 GMP,SP,
- GSM9494545 PreN,BM,rep1 PreN,BM,
- GSM9494546 PreN,BM,rep2 PreN,BM,
- GSM9494547 PreN,BM,rep3 PreN,BM,
- GSM9494548 PreN,BM,rep4 PreN,BM,
- GSM9494549 PreN,SP,rep1 PreN,SP,
- GSM9494550 PreN,SP,rep2 PreN,SP,
- GSM9494551 PreN,SP,rep3 PreN,SP,
- GSM9494552 PreN,SP,rep4 PreN,SP,
- GSM9494553 imNeu,BM,rep1 imNeu,BM,
- GSM9494554 imNeu,BM,rep2 imNeu,BM,
- GSM9494555 imNeu,BM,rep3 imNeu,BM,
- GSM9494556 imNeu,BM,rep4 imNeu,BM,
- GSM9494557 imNeu,SP,rep1 imNeu,SP,
- GSM9494558 imNeu,SP,rep2 imNeu,SP,
- GSM9494559 imNeu,SP,rep3 imNeu,SP,
- GSM9494560 imNeu,SP,rep4 imNeu,SP,
- GSM9494561 imNeu,Bld,rep1 imNeu,Bld,
- GSM9494562 imNeu,Bld,rep2 imNeu,Bld,
- GSM9494563 imNeu,Bld,rep3 imNeu,Bld,
- GSM9494564 Neutro,BM,rep1 Neutro,BM,
- GSM9494565 Neutro,BM,rep2 Neutro,BM,
- GSM9494566 Neutro,BM,rep3 Neutro,BM,
- GSM9494567 Neutro,BM,rep4 Neutro,BM,
- GSM9494568 Neutro,SP,rep1 Neutro,SP,
- GSM9494569 Neutro,SP,rep2 Neutro,SP,
- GSM9494570 Neutro,SP,rep3 Neutro,SP,
- GSM9494571 Neutro,SP,rep4 Neutro,SP,
- GSM9494572 Neutro,Bld,rep1 Neutro,Bld,
- GSM9494573 Neutro,Bld,rep2 Neutro,Bld,
- GSM9494574 Neutro,Bld,rep3 Neutro,Bld,
- GSE298001 Stage-specific Epigenetic Priming Amplifies Gene Activation During Lineage Commitment [ATAC-Seq] 36 samples shares atac-seq, lineage
- GSE337898 ATAC-seq profiling of lineage-traced exhausted and memory-like CD8+ T cell subsets during tumor progression 24 samples shares atac-seq, lineage
- GSE319596 Lineage identity governs oncogene dependence in murine NSCLC models of KRAS inhibitor resistance [ATAC-Seq] 16 samples shares atac-seq, lineage
- GSE342312 T-bet and Runx3 orchestrate effector CD8 T cell differentiation and lineage fidelity through cooperative and distinct chromatin regulatory mechanisms [Multi-omics] 40 samples shares different, lineage
- GSE261221 Scaffolding element rewires genome architecture during differentiation at the Zfp608 locus (ChIP-Seq) 189 samples shares different
- GSE272524 Chromatin-dependent motif syntax defines differentiation trajectories [ChIP-seq] 76 samples shares different
- GSE279088 Molecular dynamics driving phenotypic divergence among KRAS mutants in pancreatic tumorigenesis [ATAC-Seq] 74 samples shares atac-seq
- GSE264614 Emerging cooperativity between Oct4 and Sox2 governs the pluripotency network in mouse early embryos [ATAC-seq] 44 samples shares atac-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.