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Post Kala Azar Dermal Leishmaniasis (PKDL) genome wide transcriptional profiling by bulk RNA-sequencing

GSE324689 Homo sapiens Expression profiling by high throughput sequencing 7 samples Submitted 2026/07/29 Platform GPL24676
Summary
Post-kala-azar dermal leishmaniasis (PKDL), a dermal sequel of visceral leishmaniasis (VL), is considered an important reservoir that facilitates the transmission of VL. Although PKDL lesions demonstrate an overwhelming infiltration of CD8⁺ T cells, the molecular mechanisms regulating their recruitment to the skin remain poorly defined. To address this, bulk RNA sequencing was performed on dermal lesions from patients withPKDL and healthy controls to characterize the lesional chemokine and cytokine landscape associated with T-cell homing.Transcriptomic analysis revealed a significant upregulation of genes encoding T-cell chemoattractants, including CCL3, CCL4, CCL5, CCL17, CXCL9, and CXCL10, in PKDL lesions compared to healthy skin. In addition, sequencing data demonstrated increased expression of inflammatory cytokine transcripts such as IFN-γ, IL-5, IL-15, and TNF-α, indicating an activated inflammatory milieu. The transcriptomic profile further showed elevated expression of genes associated with chemokine receptor pathways, particularly CCR4, CCR5, and CXCR3, suggesting enhanced signaling pathways that promote CD8+ T cell migration from circulation and retention within lesional skin. Collectively, the RNA sequencing data highlights a chemokine-driven CD8+T cell recruitment and contributes to characterise the molecular markers related to the homing of lesional CD8+ T cells.
Published in
Role of chemokines and their receptors in lesional CD8⁺ T cell homing in Indian Post-Kala-Azar Dermal Leishmaniasis
Saha S, Goswami D, Saha M et al. · PLoS neglected tropical diseases 2026 · PMID 42497210 · doi:10.1371/journal.pntd.0014474
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Direct links to NCBI, no account and no request form: the whole study as GSE324689_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 7 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1436570 and SRA study SRP683205. Searching any of these in the dataset finder brings you back here.

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