Single-cell RNA sequencing reveals blood contact-dependent functional specialization of vascular-associated immune cells in a MCAO model
Single-cell RNA-seq · mouse · 4 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 4 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE326055_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1443237. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 4 more — browse all 4 samples with per-sample file links →
- GSE245129 Macrophages preserve endothelial cell specialization in the adrenal gland to modulate aldosterone secretion and blood pressure 8 samples shares specialization, blood
- GSE245127 Macrophages preserve endothelial cell specialization in the adrenal gland to modulate aldosterone secretion and blood pressure (bulk RNA-Seq) 6 samples shares specialization, blood
- GSE245128 Macrophages preserve endothelial cell specialization in the adrenal gland to modulate aldosterone secretion and blood pressure (scRNA-Seq) 2 samples shares specialization, blood
- GSE318159 RNA sequencing data of fate-mapped leptomeningeal/perivascular CAMs 8 weeks after repopulation and 1 day after MCAo 23 samples shares mcao
- GSE260488 Hypidonehydrochloride (YL-0919) improves MCAO-induced ischemia-reperfusion injury by reducing inflammation 9 samples shares mcao
- GSE197731 C57BL/6J tMCAO brain scRNAseq data 8 samples shares mcao
- GSE272033 Comparative transcriptomic analysis ofcirculatingand muscle resident fibroadipogenic progenitors in middle cerebral artery occlusion (MCAO) mice. 6 samples shares mcao
- GSE229619 Gene expression profile at single cell level of cells from the dura mater and brain of mice subjected middle cerebral artery occlusion (MCAO) or Sham treatment. 4 samples shares mcao
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.