RNA-seq of GPR15L KO versus WT mice in DSS-colitis model from colon and LPMCs
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 3 × Colon wild type mouse DSS treated sample vs 3 × Colon GPR15L KO mouse DSS treated sample vs 3 × LPMC wild type mouse DSS treated sample vs 3 × LPMC GPR15L KO mouse DSS treated sampleGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE327543_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1451194 and SRA study SRP690611. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9661355 Colon wild type mouse DSS treated sample 1 Colon wild type mouse D…
- GSM9661356 Colon wild type mouse DSS treated sample 2 Colon wild type mouse D…
- GSM9661357 Colon wild type mouse DSS treated sample 3 Colon wild type mouse D…
- GSM9661358 Colon GPR15L KO mouse DSS treated sample 1 Colon GPR15L KO mouse D…
- GSM9661359 Colon GPR15L KO mouse DSS treated sample 2 Colon GPR15L KO mouse D…
- GSM9661360 Colon GPR15L KO mouse DSS treated sample 3 Colon GPR15L KO mouse D…
- GSM9661361 LPMC wild type mouse DSS treated sample 1 LPMC wild type mouse DS…
- GSM9661362 LPMC wild type mouse DSS treated sample 2 LPMC wild type mouse DS…
- GSM9661363 LPMC wild type mouse DSS treated sample 3 LPMC wild type mouse DS…
- GSM9661364 LPMC GPR15L KO mouse DSS treated sample 1 LPMC GPR15L KO mouse DS…
- GSM9661365 LPMC GPR15L KO mouse DSS treated sample 2 LPMC GPR15L KO mouse DS…
- GSM9661366 LPMC GPR15L KO mouse DSS treated sample 3 LPMC GPR15L KO mouse DS…
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.