A multi-omic dataset of cellular and microRNA profiles in human breast milk across a spectrum of gestational ages
Non-coding RNA profiling · human · 14 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 14 samples: 3 × BM39W vs 3 × miRNA_BM39W vs 2 × BM31W vs 2 × miRNA_BM31WGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE328024_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1451413 and SRA study SRP690994. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 10 samples.
How we read this: 4 replicated groups read from 14 sample titles; they account for 10 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9670467 BM27W
- GSM9670468 BM31W_1 BM31W
- GSM9670469 BM31W_2 BM31W
- GSM9670470 BM35W
- GSM9670471 BM39W_1 BM39W
- GSM9670472 BM39W_2 BM39W
- GSM9670473 BM39W_3 BM39W
- GSM9670474 miRNA_BM27W
- GSM9670475 miRNA_BM31W_1 miRNA_BM31W
- GSM9670476 miRNA_BM31W_2 miRNA_BM31W
- GSM9670477 miRNA_BM35W
- GSM9670478 miRNA_BM39W_1 miRNA_BM39W
- GSM9670479 miRNA_BM39W_2 miRNA_BM39W
- GSM9670480 miRNA_BM39W_3 miRNA_BM39W
- GSE334503 Mapping immune cellular landscapes and vaccine responses across a spectrum of health and immunodeficiency [CITE-seq] 10 samples shares cellular, spectrum, across
- GSE332623 Immunological Differences in Atopic Dermatitis Across Age Groups: Insights from Single-Cell Multi-Omics 54 samples shares multi-omic, across
- GSE306201 Single-cell RNA sequencing reveals different cellular states in malignant cells and the tumor microenvironment in primary and metastatic ER-positive breast cancer 22 samples shares cellular, breast
- GSE228033 A single-cell atlas revealing cellular heterogeneity across healthy and diseased human thymus 10 samples shares cellular, across
- GSE272080 3D chromatin-based variant-to-gene maps across 57 human cell types reveal the cellular and genetic architecture of autoimmune disease susceptibility [captureC] 6 samples shares cellular, across
- GSE271689 Enhancing Immunotherapy Outcomes: Spatial Multi-Omics Predictive Models for Non-Small Cell Lung Cancer 586 samples shares multi-omic
- GSE14520 Gene expression data of human hepatocellular carcinoma (HCC) 488 samples shares cellular
- GSE10143 Gene Expression in Fixed Tissues and Outcome in Hepatocellular Carcinoma 387 samples shares cellular
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.