ATAC-seq profiling reveals that KLF2 regulates chromatin accessibility programs in HCC

Direct links to NCBI, no account and no request form: the whole study as GSE328230_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1454406 and SRA study SRP692403. Searching any of these in the dataset finder brings you back here.

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• GSE316389 Chromatin accessibility and gene expression profiling of primary and metastatic ER+ breast cancer [ATAC-seq] 36 samples
• GSE325835 BATF3 regulates chromatin accessibility during CD8+ T lymphocyte differentiation 36 samples
• GSE319092 Integrated Multi-Omics and Interactome Analysis of CDK8 Inhibition Reveals Erythroid Differentiation Programs and BET Synergy in AML Stem-like Cells 135 samples
• GSE287902 BPTF regulstes androgen receptor activity by enhancing chromatin accessibility and stabilizing the AR-FOXA1 interaction [Cut&Run] 40 samples
• GSE282760 Epigenomic manipulation reveals the relationship between locus specific chromatin dynamics and gene expression [ChIP-seq] 36 samples
• GSE337829 Integrated single-cell profiling of RNA and DNA interactomes reveals targetable chromatin architectures in cancer [ChIP-Seq] 32 samples
• GSE278910 Pooled CRISPR screens with joint single-nucleus chromatin accessibility and transcriptome profiling [CUT&RUN] 30 samples
• GSE270602 Comparative analysis of chromatin accessibility during chondrogenesis and in osteoarthritis 26 samples

Search all human ChIP / ATAC / CUT&Tag datasets in GEO →