Active repression of muscle fate preserves neural lineage identity during cerebellum development
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 53 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 53 samples: 53 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Active repression of muscle fate preserves neural lineage identity during cerebellum developmentbioRxiv : the preprint server for biology · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE330837_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1465771 and SRA study SRP700086. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 21 samples read as cases, 32 as controls.
How we read this: Read from 53 sample titles: 53 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9733372 P7 cerebellar cells from Tead1/2cKO, Insm1cKO, and controls
- GSM9733373 P2 cerebellar cells, Insm1 control1, RNASeq
- GSM9733374 P2 cerebellar cells, Insm1 control2, RNASeq
- GSM9733375 P2 cerebellar cells, Insm1 control3, RNASeq
- GSM9733376 P2 cerebellar cells, Insm1 control4, RNASeq
- GSM9733377 P2 cerebellar cells, Insm1 mutant1, RNASeq
- GSM9733378 P2 cerebellar cells, Insm1 mutant2, RNASeq
- GSM9733379 P2 cerebellar cells, Insm1 mutant3, RNASeq
- GSM9733380 P2 cerebellar cells, Insm1 mutant4, RNASeq
- GSM9733381 P2 cerebellar cells, Tead1/2 control1, RNASeq
- GSM9733382 P2 cerebellar cells, Tead1/2 control2, RNASeq
- GSM9733383 P2 cerebellar cells, Tead1/2 control3, RNASeq
- GSM9733384 P2 cerebellar cells, Tead1/2 mutant1, RNASeq
- GSM9733385 P2 cerebellar cells, Tead1/2 mutant2, RNASeq
- GSM9733386 P2 cerebellar cells, Tead1/2 mutant3, RNASeq
- GSM9733387 P2 cerebellar cells, Tead1/2 mutant4, RNASeq
- GSM9733388 P2 cerebellar cells, Insm1 control1, ATACSeq
- GSM9733389 P2 cerebellar cells, Insm1 control2, ATACSeq
- GSM9733390 P2 cerebellar cells, Insm1 control3, ATACSeq
- GSM9733391 P2 cerebellar cells, Insm1 mutant1, ATACSeq
- GSM9733392 P2 cerebellar cells, Insm1 mutant2, ATACSeq
- GSM9733393 P2 cerebellar cells, Insm1 mutant3, ATACSeq
- GSM9733394 P2 cerebellar cells, Tead1/2 control1, ATACSeq
- GSM9733395 P2 cerebellar cells, Tead1/2 control2, ATACSeq
- GSM9733396 P2 cerebellar cells, Tead1/2 control3, ATACSeq
- GSM9733397 P2 cerebellar cells, Tead1/2 mutant1, ATACSeq
- GSM9733398 P2 cerebellar cells, Tead1/2 mutant2, ATACSeq
- GSM9733399 P2 cerebellar cells, Tead1/2 mutant3, ATACSeq
- GSM9733400 P2 cerebellar cells, Tead1/2 mutant4, ATACSeq
- GSM9733401 P2 cerebellar cells, Wildtype1, IgG Control
- GSM9733402 P2 cerebellar cells, Wildtype2, IgG Control
- GSM9733403 P2 cerebellar cells, Wildtype1, H3K4me3 CUTRUN
- GSM9733404 P2 cerebellar cells, Wildtype2, H3K4me3 CUTRUN
- GSM9733405 P2 cerebellar cells, Wildtype1, INSM1-HA CUTRUN
- GSM9733406 P2 cerebellar cells, Wildtype2, INSM1-HA CUTRUN
- GSM9733407 P2 cerebellar cells, Wildtype1, KDM1A CUTRUN
- GSM9733408 P2 cerebellar cells, Wildtype2, KDM1A CUTRUN
- GSM9733409 P2 cerebellar cells, Wildtype3, KDM1A CUTRUN
- GSM9733410 P2 cerebellar cells, Wildtype1, TEAD1 CUTRUN
- GSM9733411 P2 cerebellar cells, Wildtype2, TEAD1 CUTRUN
+ 13 more — browse all 53 samples with per-sample file links →
- GSE224831 Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis [Prox1 OE iHep Timecourse RNA-seq] 16 samples shares repression, identity, active
- GSE224825 Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis [Prox1 OE MEF/4in1 ATAC-seq] 12 samples shares repression, identity, active
- GSE293139 Enhancer rewiring orchestrates inflammation and loss of cell identity during muscle stem cell aging 90 samples shares identity, muscle
- GSE319747 Lineage identity governs oncogene dependence in murine NSCLC models of KRAS inhibitor resistance 41 samples shares identity, lineage
- GSE291914 Dnmt3a-dependent de novo DNA methylation enforces lineage commitment and preserves functionality of memory Th1 and Tfh cells 39 samples shares preserves, lineage
- GSE293129 Enhancer rewiring orchestrates inflammation and loss of cell identity during muscle stem cell aging [CUT&RUN] 36 samples shares identity, muscle
- GSE338102 Linker histone H1.0 and JUNB Interaction Maintains Lineage-Specific and Age-Dependent Chromatin Architecture to Safeguard Cell Identity [CUT&Run] 24 samples shares identity, lineage
- GSE293130 Enhancer rewiring orchestrates inflammation and loss of cell identity during muscle stem cell aging [RNA-seq] 23 samples shares identity, muscle
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.