Sex-Dependent Effects of Neonatal Hyperoxia on Prefrontal Cortex Development
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 24 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 24 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE331357_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1467750 and SRA study SRP701844. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 24 sample titles: 24 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9744579 Hyperoxia female mouse 1 GEX
- GSM9744580 Hyperoxia female mouse 1 ATAC
- GSM9744581 Hyperoxia female mouse 2 GEX
- GSM9744582 Hyperoxia female mouse 2 ATAC
- GSM9744583 Hyperoxia female mouse 3 GEX
- GSM9744584 Hyperoxia female mouse 3 ATAC
- GSM9744585 Normal female mouse 1 GEX
- GSM9744586 Normal female mouse 1 ATAC
- GSM9744587 Normal female mouse 2 GEX
- GSM9744588 Normal female mouse 2 ATAC
- GSM9744589 Normal female mouse 3 GEX
- GSM9744590 Normal female mouse 3 ATAC
- GSM9744591 Hyperoxia male mouse 1 GEX
- GSM9744592 Hyperoxia male mouse 1 ATAC
- GSM9744593 Hyperoxia male mouse 2 GEX
- GSM9744594 Hyperoxia male mouse 2 ATAC
- GSM9744595 Hyperoxia male mouse 3 GEX
- GSM9744596 Hyperoxia male mouse 3 ATAC
- GSM9744597 Normal male mouse 1 GEX
- GSM9744598 Normal male mouse 1 ATAC
- GSM9744599 Normal male mouse 2 GEX
- GSM9744600 Normal male mouse 2 ATAC
- GSM9744601 Normal male mouse 3 GEX
- GSM9744602 Normal male mouse 3 ATAC
- GSE293709 Transcriptome analysis in the prefrontal cortex of different ASD mouse models treated with drug 1565 samples shares prefrontal, cortex
- GSE303725 Effects of attenuating astrocytic Ca2+ activity in the medial prefrontal cortex with iβARK on transcriptional profiles in wild-type mice. 17 samples shares prefrontal, cortex
- GSE313497 Cell-specific effects of acute sleep deprivation on transcriptomic signatures of non-neuronal cells in the mouse hippocampus and prefrontal cortex 11 samples shares prefrontal, cortex
- GSE293595 Transcriptome analysis in the prefrontal cortex of Adnp heterozygous mice treated with drug 68 samples shares prefrontal, cortex
- GSE293704 Transcriptome analysis in the prefrontal cortex of Tbr1+/K228E heterozygous mice treated with drug 60 samples shares prefrontal, cortex
- GSE293700 Transcriptome analysis in the prefrontal cortex of PTEN KI heterozygous mice treated with drug 60 samples shares prefrontal, cortex
- GSE293602 Transcriptome analysis in the prefrontal cortex of Chd8+/N2373K heterozygous mice treated with drug 60 samples shares prefrontal, cortex
- GSE293604 Transcriptome analysis in the prefrontal cortex of Grin2b+/C456Y heterozygous mice treated with drug 60 samples shares prefrontal, cortex
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.