Single nucleus multiome (RNAseq and ATACseq) of male and female mouse pituitary
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 32 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 28 distinct titles, 4 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE334540_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1475415 and SRA study SRP463392. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 32 sample titles: 28 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7807725 MF37, GEX
- GSM7807726 MF38, GEX
- GSM7807727 MF41, GEX
- GSM7807728 MF42, GEX
- GSM7807729 MF44, GEX, bio rep 1
- GSM7807730 MF44, GEX, bio rep 2
- GSM7807731 MF45, GEX
- GSM7807732 MF50, GEX, bio rep 1
- GSM7807733 MF50, GEX, bio rep 2
- GSM7807734 MF51, GEX
- GSM7807735 MF55, GEX
- GSM7807736 MF56, GEX
- GSM7807737 MF57, GEX
- GSM7807738 MF60, GEX
- GSM7807739 MF61, GEX
- GSM7807740 MF64, GEX
- GSM7807741 MF37, ATAC
- GSM7807742 MF38, ATAC
- GSM7807743 MF41, ATAC
- GSM7807744 MF42, ATAC
- GSM7807745 MF44, ATAC, bio rep 1
- GSM7807746 MF44, ATAC, bio rep 2
- GSM7807747 MF45, ATAC
- GSM7807748 MF50, ATAC, bio rep 1
- GSM7807749 MF50, ATAC, bio rep 2
- GSM7807750 MF51, ATAC
- GSM7807751 MF55, ATAC
- GSM7807752 MF56, ATAC
- GSM7807753 MF57, ATAC
- GSM7807754 MF60, ATAC
- GSM7807755 MF61, ATAC
- GSM7807756 MF64, ATAC
- GSE226475 Multi-omics analysis reveals single-cell meiotic hotspot dynamics and epigenomic regulations in female mammals 280 samples shares female, male
- GSE315159 Nucleus accumbens neuron subtype translatome signatures in socially stressed females 30 samples shares female, male
- GSE306854 Exploring the sex and estrous cycle-dependent differences in microglia response to amyloid-beta pathology in female and male C57BL6/J (WT) and 5xFAD using bulk mRNAseq of isolated microglia. 24 samples shares female, male
- GSE256287 Sirtuin 7 regulates dosage compensation and safeguards the female X-chromosome 182 samples shares female, male
- GSE241318 Asynchronous female reproductive organ ageing as revealed by single-cell transcriptomic atlas 21 samples shares female, male
- GSE291440 GA-Camk2a mouse RNAseq data for the manuscript by Rezaei et al: Correction of dysregulated lipid metabolism normalizes gene expression in oligodendrocytes and prolongs lifespan in female poly-GA C9orf72 mouse model 21 samples shares female, male
- GSE279918 Gene expression profile at single cell level of lungs of adult male and female C57BL/6 mice with andwithout high-fat diet-induced obesity 12 samples shares female, male
- GSE301052 Evaluation of an Anti-thyroid Mode of Action for Thyroid Follicular Cell Adenomas in Female Mice Exposed to Tertiary Butyl Alcohol 72 samples shares female, male
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.