Whole-Transcriptome Profiling Reveals RNA Expression Dynamics and ceRNA Network Remodeling across Health, Sepsis, and Sepsis-Associated Acute Respiratory Distress Syndrome
Non-coding RNA profiling · human · 24 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 24 samples: 8 × healthy control vs 8 × patient with sepsis without ARDS vs 8 × patient with sepsis-associated ARDSGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE341495_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1502829 and SRA study SRP721574. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 16 samples read as cases, 8 as controls.
How we read this: 3 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9907807 healthy control 1 healthy control
- GSM9907808 healthy control 2 healthy control
- GSM9907809 healthy control 3 healthy control
- GSM9907810 healthy control 4 healthy control
- GSM9907811 patient with sepsis without ARDS 1 patient with sepsis wit…
- GSM9907812 patient with sepsis without ARDS 2 patient with sepsis wit…
- GSM9907813 patient with sepsis without ARDS 3 patient with sepsis wit…
- GSM9907814 patient with sepsis without ARDS 4 patient with sepsis wit…
- GSM9907815 patient with sepsis-associated ARDS 1 patient with sepsis-ass…
- GSM9907816 patient with sepsis-associated ARDS 2 patient with sepsis-ass…
- GSM9907817 patient with sepsis-associated ARDS 3 patient with sepsis-ass…
- GSM9907818 patient with sepsis-associated ARDS 4 patient with sepsis-ass…
- GSM9907819 healthy control 1 healthy control
- GSM9907820 healthy control 2 healthy control
- GSM9907821 healthy control 3 healthy control
- GSM9907822 healthy control 4 healthy control
- GSM9907823 patient with sepsis without ARDS 1 patient with sepsis wit…
- GSM9907824 patient with sepsis without ARDS 2 patient with sepsis wit…
- GSM9907825 patient with sepsis without ARDS 3 patient with sepsis wit…
- GSM9907826 patient with sepsis without ARDS 4 patient with sepsis wit…
- GSM9907827 patient with sepsis-associated ARDS 1 patient with sepsis-ass…
- GSM9907828 patient with sepsis-associated ARDS 2 patient with sepsis-ass…
- GSM9907829 patient with sepsis-associated ARDS 3 patient with sepsis-ass…
- GSM9907830 patient with sepsis-associated ARDS 4 patient with sepsis-ass…
- GSE341493 Whole-Transcriptome Profiling Reveals RNA Expression Dynamics and ceRNA Network Remodeling across Health, Sepsis, and Sepsis-Associated Acute Respiratory Distress Syndrome [RNA-Seq] 12 samples shares whole-transcriptome, sepsis-associated, respiratory, remodeling, dynamics, distress, network, across
- GSE293136 Multimodal remodeling of epigenetic and enhancer networks shapes the transcriptional landscape of beige adipocytes 66 samples shares remodeling, network
- GSE235715 Multi-scaled transcriptomics of chronically inflamed nasal epithelium reveals immune-epithelial dynamics and tissue remodeling in nasal polyp formation 60 samples shares remodeling, dynamics
- GSE235714 Immune-Epithelial Interactions and Tissue Remodeling in the Inflammatory Respiratory Nasal Tract [NanoString GeoMx spatial transcriptomics] 40 samples shares respiratory, remodeling
- GSE237520 Single-cell transcriptomic reconstruction of the human hair cycle: Capturing the temporal dynamics of skin tissue remodeling 22 samples shares remodeling, dynamics
- GSE235711 Immune-Epithelial Interactions and Tissue Remodeling in the Inflammatory Respiratory Nasal Tract [scRNA-seq] 20 samples shares respiratory, remodeling
- GSE314625 WSTF deficiency reprograms regulatory networks by linking locus‑specific chromatin remodeling to altered isoform expression and misdirected signaling [mRNA-seq] 18 samples shares remodeling, network
- GSE282464 Molecular landscape of respiratory infection: A large-scale, multi-centre blood transcriptome dataset 377 samples shares respiratory
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.