Frequent driver mutations in histone H3.3 and chromatin remodeling genes in paediatric glioblastoma
Expression microarray · human · 27 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- GlioblastomaThis series is part of our curated briefing on it.
- Samples
- 27 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE34824_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA150243. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run Pediatric_GBM_11 … Pediatric_GBM_9 and carry no group information.
- GSM855942 Pediatric_GBM_11
- GSM855943 Pediatric_GBM_14
- GSM855944 Pediatric_GBM_15
- GSM855945 Pediatric_GBM_16
- GSM855946 Pediatric_GBM_17
- GSM855947 Pediatric_GBM_2
- GSM855948 Pediatric_GBM_22
- GSM855949 Pediatric_GBM_24
- GSM855950 Pediatric_GBM_26
- GSM855951 Pediatric_GBM_27
- GSM855952 Pediatric_GBM_29
- GSM855953 Pediatric_GBM_30
- GSM855954 Pediatric_GBM_35
- GSM855955 Pediatric_GBM_37
- GSM855956 Pediatric_GBM_39
- GSM855957 Pediatric_GBM_4
- GSM855958 Pediatric_GBM_40
- GSM855959 Pediatric_GBM_41
- GSM855960 Pediatric_GBM_42
- GSM855961 Pediatric_GBM_43
- GSM855962 Pediatric_GBM_45
- GSM855963 Pediatric_GBM_46
- GSM855964 Pediatric_GBM_47
- GSM855965 Pediatric_GBM_49
- GSM855966 Pediatric_GBM_6
- GSM855967 Pediatric_GBM_8
- GSM855968 Pediatric_GBM_9
- GSE131928 single cell RNA-seq analysis of adult and paediatric IDH-wildtype Glioblastomas 2 samples same disease briefing · shares glioblastoma, paediatric
- GSE13041 Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age 267 samples same disease briefing · shares glioblastoma
- GSE107560 Ivy Glioblastoma Atlas Project 305 samples same disease briefing · shares glioblastoma
- GSE10878 Integrative Genome-wide Analysis of Glioblastoma. 60 samples same disease briefing · shares glioblastoma
- GSE112650 SOX4/11 Enhances NGN2 Reprogramming Glioblastoma Cells into Neuron Cells by Modulating RhoA and CDC42/RAC1 Pathway Activity 30 samples same disease briefing · shares glioblastoma
- GSE112648 SOXC factors as suppressors modulate Rho activity to promote neuronal reprogramming of human glioblastoma cells 18 samples same disease briefing · shares glioblastoma
- GSE112645 SOXC factors as suppressors modulate Rho activity to promote neuronal reprogramming of human glioblastoma cells 12 samples same disease briefing · shares glioblastoma
- GSE115459 Exosome-transmitted RVT1 from reactive astrocytes promotes recurrence glioblastoma proliferation 9 samples same disease briefing · shares glioblastoma
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.