GEO series

SNP array data from the Cancer Cell Line Encyclopedia (CCLE)

GSE36138 Homo sapiens (human) Genome variation profiling by SNP array 947 samples Submitted 2012/03/20 Platform GPL15315

At a glance

human · 947 samples

Organism: Homo sapiens (human)
Samples: 947 samples
Data you can get: A processed table (series matrix) and supplementary files from NCBI.

Summary (written by the submitters)

The Cancer Cell Line Encyclopedia (CCLE) project is a collaboration between the Broad Institute, the Novartis Institutes for Biomedical Research and the Genomics Novartis Foundation to conduct a detailed genetic and pharmacologic characterization of a large panel of human cancer models It consists of a compilation of gene expression, chromosomal copy number, and massively parallel sequencing data from nearly 1,000 human cancer cell lines. All raw and processed data are available through an integrated portal on www.broadinstitute.org/ccle

This dataset

Open GSE36138 in finder → Find more human datasets →

Download · which file do I need?

Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

Series matrix ↓

2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need.

All supplementary files ↗

3 · The original raw files

Whole study · RAW.tar

Everything the authors deposited as one archive (GSE36138_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.

Whole study · RAW.tar ↓

Also filed as BioProject PRJNA155797. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 22460905) ↗

Samples in this study

The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.

+ 947 more — browse all 947 samples with per-sample file links →

Datasets on a similar topic

GSE62717 Affymetrix SNP 6.0 array data for ACRG Gastric Cancer Study 284 samples shares snp, array
GSE17958 Affymetrix SNP array data for 47 lung squamous cell carcinoma and 40 esophageal squamous cell carcinoma samples. 87 samples shares snp, array
GSE21123 Affymetrix SNP array data for soft tissue sarcoma samples 415 samples shares snp, array
GSE42525 Affymetrix SNP array data for follicular lymphoma (FL) and transformed follicular lymphoma (tFL) samples 91 samples shares snp, array
GSE19523 Affymetrix SNP array data for Genomic Instability and Myelodysplasia with Monosomy 7 12 samples shares snp, array
GSE9113 Affymetrix SNP array data for acute lymphoblastic leukemia samples 1496 samples shares snp, array
GSE9111 SNP array data for 50 leukemia remission samples 200 samples shares snp, array
GSE21990 Affymetrix SNP 6.0 array data for myelodysplastic/myeloproliferative neoplasms 148 samples shares snp, array

Search all human datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.