Gene expression profiling of Lgr5 positive cells within intestinal adenomas
Expression microarray · mouse · 6 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 6 samples: 3 × Lgr5-GFP_high adenoma vs Lgr5-GFP_low adenoma arrayGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE37926_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA165689. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 3 samples.
How we read this: 1 replicated groups read from 6 sample titles; they account for 3 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM930098 Lgr5-GFP_high adenoma vs Lgr5-GFP_low adenoma array_1 Lgr5-GFP_high adenoma v…
- GSM930099 Lgr5-GFP_high adenoma vs Lgr5-GFP_low adenoma array_1 dyeswap
- GSM930100 Lgr5-GFP_high adenoma vs Lgr5-GFP_low adenoma array_2 Lgr5-GFP_high adenoma v…
- GSM930101 Lgr5-GFP_high adenoma vs Lgr5-GFP_low adenoma array_2 dyeswap
- GSM930102 Lgr5-GFP_high adenoma vs Lgr5-GFP_low adenoma array_3 Lgr5-GFP_high adenoma v…
- GSM930103 Lgr5-GFP_high adenoma vs Lgr5-GFP_low adenoma array_3 dyeswap
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.