Profiling of endogenous and exosomal microRNAs in colon cancer
Non-coding RNA profiling · human · 157 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Topic
- Colorectal cancerThis series is part of our curated briefing on it.
- Samples
- 157 samples: 19 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE40247_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA173333. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 133 samples.
How we read this: 19 replicated groups read from 157 sample titles; they account for 133 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM979679 NC_FBS_exo_rep1 NC_FBS_exo
- GSM979680 NC_FBS_exo_rep2 NC_FBS_exo
- GSM979681 NC_FBS_exo_rep3 NC_FBS_exo
- GSM979682 NC_FBS_exo_rep4 NC_FBS_exo
- GSM979683 FHC_endo_rep1 FHC_endo
- GSM979684 FHC_endo_rep2 FHC_endo
- GSM979685 FHC_exo_rep1 FHC_exo
- GSM979686 FHC_exo_rep2 FHC_exo
- GSM979687 FHC_exo_rep3 FHC_exo
- GSM979688 HCT 116_endo_rep1 HCT 116_endo
- GSM979689 HCT 116_endo_rep2 HCT 116_endo
- GSM979690 HCT 116_exo_rep1 HCT 116_exo
- GSM979691 HCT 116_exo_rep2 HCT 116_exo
- GSM979692 HCT 116_exo_rep3 HCT 116_exo
- GSM979693 SW480_endo_rep1 SW480_endo
- GSM979694 SW480_endo_rep2 SW480_endo
- GSM979695 SW480_exo_rep1 SW480_exo
- GSM979696 SW480_exo_rep2 SW480_exo
- GSM979697 SW480_exo_rep3 SW480_exo
- GSM980009 HT-29_endo_rep1 HT-29_endo
- GSM980010 HT-29_endo_rep2 HT-29_endo
- GSM980011 HT-29_exo_rep1 HT-29_exo
- GSM980012 HT-29_exo_rep2 HT-29_exo
- GSM980013 HT-29_exo_rep3 HT-29_exo
- GSM980014 SW48_endo_rep1 SW48_endo
- GSM980015 SW48_endo_rep2 SW48_endo
- GSM980016 SW48_exo_rep1 SW48_exo
- GSM980017 SW48_exo_rep2 SW48_exo
- GSM980018 SW48_exo_rep3 SW48_exo
- GSM980019 RKO_endo_rep1 RKO_endo
- GSM980020 RKO_endo_rep2 RKO_endo
- GSM980021 RKO_exo_rep1 RKO_exo
- GSM980022 RKO_exo_rep2 RKO_exo
- GSM980023 RKO_exo_rep3 RKO_exo
- GSM980024 HC_serum_exo_1 HC_serum_exo
- GSM980025 HC_serum_exo_2 HC_serum_exo
- GSM980026 HC_serum_exo_3 HC_serum_exo
- GSM980027 HC_serum_exo_4 HC_serum_exo
- GSM980028 HC_serum_exo_5 HC_serum_exo
- GSM980029 HC_serum_exo_6 HC_serum_exo
+ 117 more — browse all 157 samples with per-sample file links →
- GSE110009 Single cell transcriptome landscape of primary and metastatic tumor in colon cancer 76 samples same disease briefing · shares colon
- GSE124480 Gene expression of human colon cancer HCT116 cells 5 samples same disease briefing · shares colon
- GSE12032 Inherent gene signature of stage II and III colorectal cancer leads in individual recurrence 198 samples same disease briefing
- GSE250000 Bulk RNA-sequencing of transduced colorectal cancer cell line HCT-116 and breast cancer cell line MCF-7 overexpressing full-lenght p53β or p53β-stop-lost. 4 samples same disease briefing
- GSE109308 Single-cell transcriptomic survey of adenomatous polyposis patients with germline APC mutations 97 samples same disease briefing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.