Genome-wide analysis of gene expression in murine breast fibroblasts from normal tissue, hyperplasia, adenoma and carcinoma (MMTV-PyMT model)
Expression microarray · mouse · 16 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples: 8 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE45256_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA193324. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 8 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1100176 NF2_ongel_rep1 NF2_ongel
- GSM1100177 NF2_ongel_rep2 NF2_ongel
- GSM1100178 NF3_ongel_rep1 NF3_ongel
- GSM1100179 NF3_ongel_rep2 NF3_ongel
- GSM1100180 HpAF1_ongel_rep1 HpAF1_ongel
- GSM1100181 HpAF1_ongel_rep2 HpAF1_ongel
- GSM1100182 AdAF1_ongel_rep1 AdAF1_ongel
- GSM1100183 AdAF1_ongel_rep2 AdAF1_ongel
- GSM1100184 CAF1_ongel_rep1 CAF1_ongel
- GSM1100185 CAF1_ongel_rep2 CAF1_ongel
- GSM1100186 CAF2_ongel_rep1 CAF2_ongel
- GSM1100187 CAF2_ongel_rep2 CAF2_ongel
- GSM1100188 CAF3_ongel_rep1 CAF3_ongel
- GSM1100189 CAF3_ongel_rep2 CAF3_ongel
- GSM1100190 CAF4_ongel_rep1 CAF4_ongel
- GSM1100191 CAF4_ongel_rep2 CAF4_ongel
- GSE296064 Gene expression analysis of normal mammary gland fibroblasts (NFs) and cancer-associated fibroblasts (CAFs) from the murine breast cancer model MMTV-PyMT after perturbing the expression of Hsp90aa1 and Hsp90ab1 by RNAi 21 samples shares fibroblasts, mmtv-pymt, breast, normal
- GSE270152 Tryptophan 2, 3-dioxygenase positive matrix fibroblasts fuel breast cancer lung metastasis via kynurenine-mediated ferroptosis resistance of metastatic cells and T cell dysfunction II 12 samples shares fibroblasts, breast
- GSE21755 Rapamycin effect on Wild Type and TSC deficient Mouse Embryonic Fibroblasts : Time Course 25 samples shares fibroblasts
- GSE22292 Gene expression in mouse neonatal cardiomyocytes, cardiac fibroblasts, reprogramming failed GFP- cells, and GFP+ iCMs 18 samples shares fibroblasts
- GSE20979 Genome-wide Analysis of Class IIa Histone Deacetylase Regulation of Hepatic Gluconeogenesis 16 samples shares genome-wide
- GSE235242 Senescent cancer-associated fibroblasts in pancreatic adenocarcinoma suppress CD8+ T cell activation and inhibit response to immune checkpoint therapy [Kras_p53] 14 samples shares fibroblasts
- GSE229916 Pericytes and perivascular fibroblasts contribute to central nervous system fibrosis in a region dependent manner 832 samples shares fibroblasts
- GSE262791 LaminB1 DamID, RNA-seq and Genome-wide analysis of replication timing in RIF1 depleted preimplantation mouse embryos 468 samples shares genome-wide
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.