Genome wide expression analysis of FABP4 modulation in urothelial cancer cell UM-UC14 and UM-UC9
Expression microarray · human · 12 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE47993_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA208592. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1164283 UM-UC9CONTA
- GSM1164284 UM-UC9CONTB
- GSM1164285 UM-UC9CONTC
- GSM1164286 UM-UC9ROSIGA
- GSM1164287 UM-UC9ROSIGB
- GSM1164288 UM-UC9ROSIGC
- GSM1164289 UM-UC14NTA
- GSM1164290 UM-UC14NTB
- GSM1164291 UM-UC14NTC
- GSM1164292 UM-UC14FABP4KDA
- GSM1164293 UM-UC14FABP4KDB
- GSM1164294 UM-UC14FABP4KDC
- GSE264395 The disease modeling of Jacob Syndrome reveals an aberrant genome-wide expression modulation from the Y chromosome [RNA-seq] 99 samples shares modulation, wide
- GSE300506 Neuro-Glioblastoma Connectivity: Brain-Wide Mapping and Cholinergic Modulation of Tumor Progression 21 samples shares modulation, wide
- GSE295220 FABP4 Mediated Fatty Acid Transport Promotes Proliferation and Survival of Platinum-Resistant Ovarian Cancer Cells 15 samples shares fabp4
- GSE310742 FABP4, marker of worse prognosis in cardiovascular disease, induces neutrophil’s proatherogenic phenotype which is modulated by semaglutide 22 samples shares fabp4
- GSE266390 Transcriptome profiling associated with CARD11 overexpression in Colorectal Cancer implicates a potential role for Tumour Immune Microenvironment and Cancer pathways modulation via NF-κB 35 samples shares modulation
- GSE63564 YBX1-dependent LNA-tRF-mediated modulation of gene expression 24 samples shares modulation
- GSE63563 YBX1-dependent LNA-tRF-mediated modulation of gene expression under hypoxia 8 samples shares modulation
- GSE263706 Chemotherapy Modulation by a Cancer-Associated Microbiota Metabolite 56 samples shares modulation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.