GEO series

RNAseq data from wild type and evolved Pseudomonas fluorescens SBW25 strains

GSE48900 Pseudomonas [fluorescens] SBW25 Expression profiling by high throughput sequencing 4 samples Submitted 2015/02/05 Platform GPL17454

Summary

We report mRNA expression data from Pseudomonas fluorescens SBW25 wild type and two evolved strains (Beaumont et al., 2009). The evolution of one of these strains saw the emergence of colony switching; 1B4 switches rapidly between two different colony phenotypes. These two phenotypes were found to be genetically identical. Thus, in order to gain insight into epigenetic mechanisms of switching, we were interested in identifiying gene expression differences between ancestors and the 1B4 colony phenotypes.

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Direct links to NCBI, no account and no request form: the whole study as GSE48900_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Whole study · RAW.tar ↓ Series matrix ↓ All supplementary files ↗ Raw reads on ENA ↗

Also filed as BioProject PRJNA212234 and SRA study SRP027501. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 25763575) ↗

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