Oxidative metabolism and PGC-1 attenuate macrophage-mediated inflammation
Expression microarray · mouse · 9 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 9 samples: 8 × 4.5.05 J1 TH1-TH2Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE5003_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA95787. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 8 samples.
How we read this: 1 replicated groups read from 9 sample titles; they account for 8 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM112953 4.5.05 J1 TH1-TH2 8 4.5.05 J1 TH1-TH2
- GSM112954 4.5.05 J1 TH1-TH2
- GSM112955 4.5.05 J1 TH1-TH2 9 4.5.05 J1 TH1-TH2
- GSM112956 4.5.05 J1 TH1-TH2 2 4.5.05 J1 TH1-TH2
- GSM112957 4.5.05 J1 TH1-TH2 3 4.5.05 J1 TH1-TH2
- GSM112958 4.5.05 J1 TH1-TH2 4 4.5.05 J1 TH1-TH2
- GSM112959 4.5.05 J1 TH1-TH2 5 4.5.05 J1 TH1-TH2
- GSM112960 4.5.05 J1 TH1-TH2 6 4.5.05 J1 TH1-TH2
- GSM112961 4.5.05 J1 TH1-TH2 7 4.5.05 J1 TH1-TH2
- GSE305395 PGC-1alpha pathway dysregulation disrupts myofiber specification in a mouse model of SBMA [AR113Q RNA-Seq] 27 samples shares pgc-1
- GSE302867 Cardiac adaptation to endurance exercise training requires suppression of GDF15 via PGC-1α 20 samples shares pgc-1
- GSE329198 PGC-1alpha pathway dysregulation disrupts myofiber specification in a mouse model of SBMA 14 samples shares pgc-1
- GSE332777 miR-155-driven dysregulation of the PPARγ/PGC-1α/ERRα-Drp1 axis contributes to mitochondrial damage in hypoxic/ischemic neuronal cells 12 samples shares pgc-1
- GSE305396 PGC-1alpha pathway dysregulation disrupts myofiber specification in a mouse model of SBMA [snRNA-Seq] 6 samples shares pgc-1
- GSE266396 Cx43-mediated mitochondrial transfer from MSCs mitigate oxidative stress-inflammation interplay in IRI-AKI via PGC1a activation 40 samples shares oxidative
- GSE280580 PKC modulator bryostatin-1 therapeutically targets CNS innate immunity to attenuate neuroinflammation and promote remyelination 33 samples shares attenuate
- GSE262011 Obesogenic diet in mice leads to inflammation and oxidative stress in the mother in association with sex-specific changes in fetal development, inflammatory markers and placental transcriptome 24 samples shares oxidative
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.