Identification of cytokine signals regulated by Caspase-9
Expression microarray · mouse · 12 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 6 × LK vs 6 × MWGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE57934_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA248448. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 2 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1397798 LK1 LK
- GSM1397799 LK2 LK
- GSM1397800 LK3 LK
- GSM1397801 LK4 LK
- GSM1397802 LK5 LK
- GSM1397803 LK6 LK
- GSM1397804 MW1 MW
- GSM1397805 MW2 MW
- GSM1397806 MW3 MW
- GSM1397807 MW4 MW
- GSM1397808 MW5 MW
- GSM1397809 MW6 MW
- GSE71263 Nrf2 suppresses macrophage inflammatory response by blocking proinflammatory cytokine transcription 12 samples shares cytokine
- GSE290401 Reduced function of the adaptor SH2B3 promotes T1D via altered gc cytokine-regulated, T cell intrinsic immune tolerance 60 samples shares cytokine
- GSE239814 Mitochondrial signals mediate paternal effects on offspring metabolism (Smart-Seq) 221 samples shares signals
- GSE225821 Identification of the mesenchymal signals regulating embryonic mammary gland development 25 samples shares signals
- GSE302715 A tumor-associated macrophage-targeted immunocytokine leveraging T and NK cell synergy for potent cancer immunotherapy [scRNA-seq] 187 samples shares cytokine
- GSE326693 Salmonella SopB suppresses post-transcriptionally regulated cytokine release to reduce early tissue inflammation and delay disease progression 15 samples shares cytokine
- GSE302862 Divergent cytokine and transcriptional signatures control functional T follicular helper cell heterogeneity (RNAseq) 104 samples shares cytokine
- GSE304868 Cytokine–ontogeny interaction shapes macrophage transcriptional states 100 samples shares cytokine
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.