GEO series
Robust In Vitro Induction of Human Germ Cell Fate from Pluripotent Stem Cells
GSE67259
Macaca fascicularis; Mus musculus; Homo sapiens
Expression profiling by high throughput sequencing
74 samples
Submitted 2015/07/20
Platform GPL15907Platform GPL16288Platform GPL19944
Summary
Mechanisms underlying human germ cell development are unclear, partly due to difficulties in studying human embryos and lack of suitable experimental systems. Here, we show that human induced pluripotent stem cells (hiPSCs) differentiate into incipient mesoderm-like cells (iMeLCs), which robustly generate human primordial germ cell-like cells (hPGCLCs) that can be purified using the surface markers EpCAM and INTEGRINα6. The transcriptomes of hPGCLCs and primordial germ cells (PGCs) isolated from non-human primates are similar, and although specification of hPGCLCs and mouse PGCs rely on similar signaling pathways, hPGCLC specification transcriptionally activates germline fate without transiently inducing eminent somatic programs. This includes genes important for naive pluripotency and repression of key epigenetic modifiers, concomitant with epigenetic reprogramming. Accordingly, BLIMP1, which represses somatic programs in mice, activates and stabilizes a germline transcriptional circuit and represses a default neuronal differentiation program. Together, these findings provide a foundation for understanding and reconstituting human germ cell development in vitro.
This dataset
Download
Direct links to NCBI, no account and no request form: the whole study as
GSE67259_RAW.tar, processed values as the series
matrix, the supplementary file directory, and per-sample
supplementary files for any of the 74 samples.
Raw sequencing reads are also available from ENA.
Also filed as
BioProject PRJNA279357 and
SRA study SRP056527.
Searching any of these in the dataset finder brings you back here.
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative.
Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.