RNA-seq of tumor-educated platelets enables blood-based pan-cancer, multiclass and molecular pathway cancer diagnostics
RNA-seq (gene expression) · human · 285 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 285 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE68086_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA281708 and SRA study SRP057500. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 285 more — browse all 285 samples with per-sample file links →
- GSE256466 DrugMap: A quantitative pan-cancer analysis of cysteine ligandability (RNA-Seq) 69 samples shares pan-cancer, rna-seq
- GSE157220 pan-cancer single cell RNA-seq analysis of cell lines 19 samples shares pan-cancer, rna-seq
- GSE280384 Mesenchymal Colorectal Cancers Secrete Vesicles With Unique Cargo That Can Be Used For Liquid Biopsy Based Diagnostics [RNA-seq plasma] 17 samples shares diagnostics, rna-seq
- GSE320255 Pan-Cancer Analysis Reveals Mutation-Driven TE Dysregulation as a Contributor to Immune Suppression [RNA-seq] 14 samples shares pan-cancer, rna-seq
- GSE273702 Integration of transcriptional and epigenetic regulation of TFEB reveals dual functional roles in Pan-cancer [RNA-seq] 12 samples shares pan-cancer, rna-seq
- GSE280367 Mesenchymal Colorectal Cancers Secrete Vesicles With Unique Cargo That Can Be Used For Liquid Biopsy Based Diagnostics [RNA-seq] 8 samples shares diagnostics, rna-seq
- GSE272124 Pan-cancer analysis combining RNA-seq reveals that ZNF25 contributes to glioma progression mainly through modulating PI3K-AKT signaling pathway 6 samples shares pan-cancer, rna-seq
- GSE273023 RNA-seq of vertebral metastatic tumor samples from pan-cancer primary tumors 5 samples shares pan-cancer, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.