Transcriptom analysis of differentially regulated genes in metastasis associated macrophages(MAM) compared with lung and spleen resident macrophages
Expression microarray · mouse · 12 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE68862_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA283935. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM1684616 Lung resident macrophage rep1 [128044_532]
- GSM1684617 Metastasis associated macrophage rep1 [128044_635]
- GSM1684618 Lung resident macrophage rep2 [128263_532]
- GSM1684619 Metastasis associated macrophage rep2 [128263_635]
- GSM1684620 Lung resident macrophage rep3 [130203_532]
- GSM1684621 Metastasis associated macrophage rep3 [130203_635]
- GSM1684622 Metastasis associated macrophage rep1 [140879_532]
- GSM1684623 Spleen resident macrophage rep1 [140879_635]
- GSM1684624 Metastasis associated macrophage rep2 [140885_532]
- GSM1684625 Spleen resident macrophage rep2 [140885_635]
- GSM1684626 Metastasis associated macrophage rep3 [140887_532]
- GSM1684627 Spleen resident macrophage rep3 [140887_635]
- GSE333887 Matched single-cell chromatin, transcriptome, and surface marker profiling captures in vivo epigenomic reprogramming during basal-to-luminal transition in the mammary gland [transplantations_OneCell_multiome] 14 samples shares mam, transcriptom
- GSE327176 Single-cell transcriptomic profiling unveils tumor-mediated reprogramming of neutrophils and their unique vulnerability that inhibits metastasis 25 samples shares transcriptom, metastasis
- GSE309348 Whole transcriptome sequencing of UPEC-infected testis and epididymis (5d) following depletion of CX3CR1+ macrophages 18 samples shares transcriptom, macrophages
- GSE239287 Single-cell transcriptome sequencing of macrophages in acute kidney injury(AKI) to chronic kidney dieases(CKD) 17 samples shares transcriptom, macrophages
- GSE331488 A global view of cell-type-specific temporal dynamics in mammalian aging [I] 771 samples shares mam
- GSE331489 A global view of cell-type-specific temporal dynamics in mammalian aging [II] 725 samples shares mam
- GSE325776 Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes 36 samples shares mam
- GSE319420 Uncovering Critical Lysines in Mammalian Histone H3 with High-Throughput CRISPR Prime Editing [CUT&Tag] 26 samples shares mam
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.