Perturb-seq: Dissecting molecular circuits with scalable single cell RNA profiling of pooled genetic screens

Direct links to NCBI, no account and no request form: the whole study as GSE90063_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA354362 and SRA study SRP093670. Searching any of these in the dataset finder brings you back here.

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+ 6 more — browse all 6 samples with per-sample file links →

• GSE202126 Single-cell Total-RNA Profiling Unveils Regulatory Hubs of Transcription Factors 1089 samples
• GSE272618 Single-Molecule Barcoding Technology for Single-Cell Genomics 140 samples
• GSE331030 Lentiviral single-cell MPRA of synthetic enhancers reveals motif affinity-based encoding of cell state specificity [sc-lentiMPRA 2] 66 samples
• GSE335842 Single-Cell RNA sequencing reveals clonally-expanded CD4+ tissue-resident memory T cells in Histidyl-tRNA Synthetase-induced myositis 38 samples
• GSE228957 Single-cell or nucleus RNAseq of neuroblastoma patient-derived xenografts 17 samples
• GSE324714 Acquired genetic and cell state changes in IDH-mutant glioma progression [coculture experiments] 16 samples
• GSE266161 RoCK and ROI: a single-cell RNA-sequencing method with enhanced transcriptome information via targeted enrichment of transcripts and preselected, region-specific sequencing 13 samples
• GSE260997 Mutant IDH inhibitors induce lineage differentiation in IDH-mutant Oligodendroglioma III 2458 samples

Search all RNA-seq datasets in GEO →