Myeloma versus Lymphoma cell lines
Expression microarray · human · 15 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- Multiple myelomaThis series is part of our curated briefing on it.
- Samples
- 15 samples: 15 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE9031_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA102533. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 15 sample titles: 15 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM229038 OciLy7 - mAdbID:66126
- GSM229039 OciLy19 - mAdbID:66127
- GSM229040 LB84-1 - mAdbID:68988
- GSM229041 H1112 - mAdbID:68990
- GSM229042 KMS11 - mAdbID:68991
- GSM229043 KMS12 - mAdbID:68992
- GSM229044 JIM3 - mAdbID:68994
- GSM229045 DB - mAdbID:69800
- GSM229046 BJAB - mAdbID:69818
- GSM229047 Mino - mAdbID:76647
- GSM229048 Z138 - mAdbID:76648
- GSM229049 UPN1 - mAdbID:76649
- GSM229050 Jeko - mAdbID:76650
- GSM229051 JJN3 - mAdbID:79766
- GSM229052 LP1 - mAdbID:79769
- GSE179453 Expression data from control-knockdown (CTR-KD) and MAST4-KD human multiple myeloma (MM) cell lines 6 samples same disease briefing · shares myeloma, lines
- GSE167042 Splicing modulation increases BCL2 dependence and sensitizes Multiple Myeloma cells to Venetoclax 4 samples same disease briefing · shares myeloma
- GSE161195 Single cell RNA-seq of relapsed and refractory multiple myeloma patients defines new resistance pathways and targeted treatments 213 samples same disease briefing · shares myeloma
- GSE155631 Oncogenic mechanisms of DIS3 mutations in Multiple Myeloma 62 samples same disease briefing · shares myeloma
- GSE167969 ATAC-seq and RNA-Seq of Multiple Myeloma 46 samples same disease briefing · shares myeloma
- GSE148715 “Direct to Drug” screening as a precision medicine tool in multiple myeloma 38 samples same disease briefing · shares myeloma
- GSE178442 Genome-wide maps of transcription in DEAF1 overexpression(OE) and wildtype(WT) cells in Multiple Myeloma 4 samples same disease briefing · shares myeloma
- GSE167968 RNA-seq of Multiple Myeloma 33 samples same disease briefing · shares myeloma
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.