A Molecular Census of Arcuate Hypothalamus and Median Eminence Cell Types
Single-cell RNA-seq · mouse · 11 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Mus musculus (mouse)
- Samples
- 11 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE93374_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA360829 and SRA study SRP096361. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 11 more — browse all 11 samples with per-sample file links →
- GSE90806 A Molecular Census of Arcuate Hypothalamus and Median Eminence Cell Types 25 samples shares hypothalamus, eminence, arcuate, census, median, types
- GSE282955 Arcuate nucleus of the hypothalamus cells are sensitive to nutritional state in a sex dependent manner. 12 samples shares hypothalamus, arcuate
- GSE262837 Single-cell RNA sequencing of the median eminence and hypothalamic periventricular region in male and female mice 9 samples shares eminence, median
- GSE289461 Single-cell gene expression profile of the postnatal mouse arcuate nucleus in the hypothalamus 8 samples shares hypothalamus, arcuate
- GSE74672 Single-cell RNA-seq of mouse hypothalamus 2881 samples shares hypothalamus
- GSE282067 Regulatory T-cells in the hypothalamus control immune activation and improve metabolic impairments upon high-calorie environments 67 samples shares hypothalamus
- GSE121891 Single cell RNAseq of mouse olfactory bulb reveals cellular heterogeneity and activity dependent molecular census of adult-born neurons 6 samples shares census
- GSE292341 Single cell RNA sequencing of hippocampus and hypothalamus in AD mice with fructose-induced MetS and DHA and NR supplementation 48 samples shares hypothalamus
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.