Extensive Functional Redundancy of Mammalian Enhancers
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 52 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 52 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE93730_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA362215 and SRA study SRP096902. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 52 more — browse all 52 samples with per-sample file links →
- GSE254723 Extensive folding variability between homologous chromosomes in mammalian cells 2239 samples shares extensive, mammalian
- GSE294389 BMAL1 and YAP cooperate to hijack enhancers and promote inflammation in the aged epidermis 131 samples shares enhancers
- GSE202819 ZBTB16/PLZF regulates juvenile spermatogonial stem cell development via an extensive transcription factor poising network 64 samples shares extensive
- GSE240327 A set of Sox2-dependent OSN enhancers mediates the immediate response to neural induction and default neural differentiation of embryonic stem cells 40 samples shares enhancers
- GSE249496 Developmental cell type specific enhancers in orofacial morphology and disease [mouse] 24 samples shares enhancers
- GSE333859 A global view of cell-type-specific temporal dynamics in mammalian aging 1496 samples shares mammalian
- GSE248194 Characterizing dynamics and lineage of bihormonal cell in mammalian pancreatic islets [Smart-seq3xpress] 1430 samples shares mammalian
- GSE331488 A global view of cell-type-specific temporal dynamics in mammalian aging [I] 771 samples shares mammalian
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.