Identification of potential biomarkers in donor cows for in vitro embryo production by granulosa cells transcriptomics
RNA-seq (gene expression) · Bos taurus · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Bos taurus
- Samples
- 24 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE94541_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA371462 and SRA study SRP098909. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 24 more — browse all 24 samples with per-sample file links →
- GSE255879 Change in the ability of granulosa cells to elongate transzonal projections during follicle development 24 samples shares granulosa
- GSE128697 Persistent effects on bovine granulosa cell transcriptome after resolution of uterine disease 16 samples shares granulosa
- GSE42535 Gene expression in cultured bovine ovarian granulosa 15 samples shares granulosa
- GSE11495 Regulation of granulosa and theca cell transcriptomes during ovarian antral follicle development. 12 samples shares granulosa
- GSE50854 Transcriptome analysis of Bovine granulosa cells of preovulatory follicles at 30, 60, 90 and 120 days postpartum 9 samples shares granulosa
- GSE52480 Maternal age related changes in transcriptome of bovine granulosa cells of the dominant follicle at the time of selection 6 samples shares granulosa
- GSE72038 Effects of Intramuscular Administration of Folic Acid and Vitamin B12 on Granulosa Cells Gene Expression in Postpartum Dairy Cow 6 samples shares granulosa
- GSE54138 Effect of maternal age on the granulosa cell transcriptome of preovulatory dominant follicle in cattle 6 samples shares granulosa
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.