Temporal Control of Mammalian Cortical Neurogenesis by m6A Methylation
DNA methylation · human · 15 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 15 samples: 15 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE99017_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA387009 and SRA study SRP107200. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 15 sample titles: 15 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM2630319 mouse1_m6A
- GSM2630320 mouse2_m6A
- GSM2630321 mouse3_m6A
- GSM2630322 mouse1_input
- GSM2630323 mouse2_input
- GSM2630324 mouse3_input
- GSM2630325 org1_m6A
- GSM2630326 org2_m6A
- GSM2630327 org_input
- GSM2742603 m6A1_pcw11
- GSM2742604 m6A2_pcw11
- GSM2742605 m6A3_pcw11
- GSM2742606 input1_pcw11
- GSM2742607 input2_pcw11
- GSM2742608 input3_pcw11
- GSE290978 Methylation pseudotime analysis for label-free profiling of the temporal chromatin landscape with long-read sequencing 46 samples shares methylation, temporal
- GSE248942 Spatiotemporal control of SMARCA5 by a MAPK-RUNX1 axis distinguishes mutant KRAS-driven pancreatic malignancy from tissue regeneration (ATAC-Seq) 123 samples shares temporal, control
- GSE78040 Reversible methylation of m6Am in the 5′ cap controls mRNA stability 28 samples shares methylation, control
- GSE248944 Spatiotemporal control of SMARCA5 by a MAPK-RUNX1 axis distinguishes mutant KRAS-driven pancreatic malignancy from tissue regeneration (CUT&RUN) 14 samples shares temporal, control
- GSE97179 Single Cell Methylome Signatures Reveal Distinct Neuronal Populations and Regulatory Elements in the Mammalian Cortex 6172 samples shares mammalian
- GSE35156 Conserved Topological Domains in Mammalian Genomes Identified by High-resolution Analysis of Chromatin Interactions 9 samples shares mammalian
- GSE262580 High-resolution, noninvasive single-cell lineage tracing in mice and humans based on DNA methylation epimutations 697 samples shares methylation
- GSE282636 Multiplex generation and single cell analysis of structural variants in mammalian genomes 197 samples shares mammalian
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.