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Cell-Surface Proteomics · Mass Spectrometry · Immunotherapy Targets

Neuroblastoma Surface Targets

1,655 cell-surface proteins experimentally measured on neuroblastoma cell lines and xenografts by mass spectrometry, paired with normal-tissue expression for safety. Find CAR-T, antibody-drug-conjugate and antibody targets that sit high on the tumor surface but are absent from vital normal tissues — the way DLK1, GPC2 and L1CAM were found.

What is this? How do I find a good target? ▼

The idea: A protein is a good immunotherapy target (CAR-T, ADC, antibody) if it sits on the cell surface, is abundant on the tumor, and is absent / low in normal tissues (so the therapy doesn't attack healthy organs).

How it was measured: Plasma-membrane-enriched mass spectrometry on 9 neuroblastoma cell lines and 12 xenograft models directly detected proteins on the cell surface — this is experimental, not predicted.

Reading the safety column: Tumor specificity = the number of 22 normal tissues where the gene is expressed within 4× of the tumor (i.e. not specific there). Lower = more tumor-specific = safer. Sort by the target score (surface abundance × specificity) to rank candidates, then open any protein to see its full normal-tissue safety profile.

Search — gene or UniProt
Max normal tissues (specificity)
Evidence
GeneUniProtSurface (cell line)Xenograft Tumor specificityNBL TPMSuper-enhTarget score
Search to browse, or hit Search to rank all by target score.

Data: proteogenomic surfaceome study of neuroblastoma, Cancer Cell 2024 · raw MS at ProteomeXchange PXD047474. Surface abundance = log2 MS intensity. Tumor specificity from OpenPedCan RNA across 22 normal tissues. Target score (surface abundance × specificity) is a transparent ranking heuristic — open a protein for the full multi-omic evidence. Built by Bharat Prajapati · free, no login.