Reduced representation bisulfite-sequencing of human leukemia cells and mouse hematopoietic progenitors
DNA methylation · mouse · 34 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Mus musculus (mouse)
- Samples
- 34 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE100041_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA390544 and SRA study SRP109220. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 34 more — browse all 34 samples with per-sample file links →
- GSE29130 Epigenetic profiling of hematopoietic stem cells and leukemia stem cells 15 samples shares hematopoietic, leukemia
- GSE277684 Premature senescence impairs hematopoietic stem cell function during sickle cell disease in mice and humans 52 samples shares hematopoietic
- GSE296761 Elucidating the impact of chemotherapy on skeletal progenitors 43 samples shares progenitors
- GSE247409 DDX41 heterozygosity impairs hematopoietic progenitor cell fitness and cooperates with p53 mutation to drive malignancy 26 samples shares hematopoietic
- GSE284443 L1CAM generates SOX2+ metastatic progenitors through planar cell polarity signaling in lung adenocarcinoma 6 samples shares progenitors
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.