ILC1 confer early host protection at initial sites of viral infection
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 27 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 27 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE103904_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA407437 and SRA study SRP117731. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 27 more — browse all 27 samples with per-sample file links →
- GSE103901 ILC1 confer early host protection at initial sites of viral infection [RNA-Seq] 24 samples shares ilc1, protection, initial, confer, early, sites, viral, host
- GSE297741 ILC1 quiescence confers protection against MCMV infections during undernutrition 24 samples shares ilc1, protection, confer
- GSE278132 Lung structural cell dynamics are altered by influenza virus infection experience leading to rapid immune protection following viral re-challenge 35 samples shares protection, viral
- GSE297581 The murine meninges is a resilient B cell lymphopoietic reservoir conferring protection against infections 32 samples shares protection, confer
- GSE300949 The murine meninges is a resilient B cell lymphopoietic reservoir conferring protection against infections [BCR-seq] 24 samples shares protection, confer
- GSE255281 Myeloid-specific ferritin light chain deletion does not confer renal protection in sepsis-associated acute kidney injury 20 samples shares protection, confer
- GSE276667 A multivalent mRNA vaccine elicits robust immune responses and confers protection in a murine model of monkeypox virus infection 18 samples shares protection, confer
- GSE224054 SLAMF1 is regulated by macrophage-CD4 T cell contact and confers protection to Mycobacterium tuberculosis 16 samples shares protection, confer
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.