Role of the STAR proteins in early mammalian development
RNA-seq (gene expression) · mouse · 60 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 60 samples: 48 distinct titles, 3 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE153801_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA644118 and SRA study SRP687623. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 60 sample titles: 48 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM4654293 Quaking KO, time 0, replicate 1 [Ribosome profiling]
- GSM4654294 Quaking KO, time 0, replicate 2 [Ribosome profiling]
- GSM4654295 Quaking KO, time 0, replicate 3 [Ribosome profiling]
- GSM4654296 Quaking KO, time 10, replicate 1 [Ribosome profiling]
- GSM4654297 Quaking KO, time 10, replicate 2 [Ribosome profiling]
- GSM4654298 Quaking KO, time 10, replicate 3 [Ribosome profiling]
- GSM4654299 Sam68 KO, time 0, replicate 1 [Ribosome profiling]
- GSM4654300 Sam68 KO, time 0, replicate 2 [Ribosome profiling]
- GSM4654301 Sam68 KO, time 0, replicate 3 [Ribosome profiling]
- GSM4654302 Sam68 KO, time 10, replicate 1 [Ribosome profiling]
- GSM4654303 Sam68 KO, time 10, replicate 2 [Ribosome profiling]
- GSM4654304 Sam68 KO, time 10, replicate 3 [Ribosome profiling]
- GSM4654305 Willd Type, time 0, replicate 1 [Ribosome profiling]
- GSM4654306 Willd Type, time 0, replicate 2 [Ribosome profiling]
- GSM4654307 Willd Type, time 0, replicate 3 [Ribosome profiling]
- GSM4654308 Willd Type, time 10, replicate 1 [Ribosome profiling]
- GSM4654309 Willd Type, time 10, replicate 2 [Ribosome profiling]
- GSM4654310 Willd Type, time 10, replicate 3 [Ribosome profiling]
- GSM4654311 Sam68 KO, time 0, replicate 1 [RNA-seq]
- GSM4654312 Sam68 KO, time 0, replicate 2 [RNA-seq]
- GSM4654313 Sam68 KO, time 0, replicate 3 [RNA-seq]
- GSM4654314 Sam68 KO, time 10, replicate 1 [RNA-seq]
- GSM4654315 Sam68 KO, time 10, replicate 2 [RNA-seq]
- GSM4654316 Sam68 KO, time 10, replicate 3 [RNA-seq]
- GSM4654317 Sam68 KO, time 3, replicate 1 [RNA-seq]
- GSM4654318 Sam68 KO, time 3, replicate 2 [RNA-seq]
- GSM4654319 Sam68 KO, time 3, replicate 3 [RNA-seq]
- GSM4654320 Quaking KO, time 0, replicate 1 [RNA-seq]
- GSM4654321 Quaking KO, time 10, replicate 1 [RNA-seq]
- GSM4654322 Quaking KO, time 3, replicate 1 [RNA-seq]
- GSM4654323 Quaking KO, time 0, replicate 2 [RNA-seq]
- GSM4654324 Quaking KO, time 10, replicate 2 [RNA-seq]
- GSM4654325 Quaking KO, time 3, replicate 2 [RNA-seq]
- GSM4654326 Quaking KO, time 0, replicate 3 [RNA-seq]
- GSM4654327 Quaking KO, time 10, replicate 3 [RNA-seq]
- GSM4654328 Quaking KO, time 3, replicate 3 [RNA-seq]
- GSM4654329 Wild Type, time 0, replicate 1 [RNA-seq]
- GSM4654330 Wild Type, time 10, replicate 1 [RNA-seq]
- GSM4654331 Wild Type, time 3, replicate 1 [RNA-seq]
- GSM4654332 Wild Type, time 0, replicate 2 [RNA-seq]
+ 20 more — browse all 60 samples with per-sample file links →
- GSE264153 TATA-binding Associated Factors have distinct roles during early mammalian development 57 samples shares mammalian, early
- GSE263415 Spatial hepatocyte plasticity of gluconeogenic gene expression and gluconeogenic activity during the metabolic transitions between fed, fasted and starvation states [RNA-Seq] 18 samples shares star
- GSE291652 Codon-specific ribosome stalling reshapes translational dynamics during branched-chain amino acid starvation 18 samples shares star
- GSE315771 HDI-STARR-seq library profiling of differential accessible chromatin regions (DARs) in livers of male, female and male treated with continuous growth hormone (cGH) mice. 12 samples shares star
- GSE235119 Temporal recording of mammalian development and precancer 25 samples shares mammalian
- GSE288507 5-Formylcytosine Is Not a Prevalent RNA Modification in Mammalian Cells 73 samples shares mammalian
- GSE269332 Cell state dynamics during early stages of serous endometrial carcinoma 30 samples shares early
- GSE327298 Ribo-Tweezer: rapid removal of ribosomal proteins reveals new layers of post-transcriptional gene-regulation [Ribo-Seq] 21 samples shares proteins
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.