Human iPS cells and fibroblasts
DNA methylation · human · 32 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 32 samples: 22 distinct titles, 2 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE18111_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA119407. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 32 sample titles: 22 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM452726 Fibroblast 1
- GSM452727 iPS 1
- GSM452728 iPS 2
- GSM452729 iPS 3
- GSM452730 Fibroblast 3
- GSM452731 iPS 4
- GSM452732 iPS 5
- GSM452733 iPS 6
- GSM452734 Fibroblast 5
- GSM452735 Fibroblast 2
- GSM452736 Fibroblast 6
- GSM452737 Fibroblast 4
- GSM455529 Fibroblast 6 input, methyl-depleted
- GSM455530 iPS 6 input, methyl-depleted
- GSM455531 Fibroblast 5 input, methyl-depleted
- GSM455532 iPS 5 input, methyl-depleted
- GSM455533 Fibroblast 1 input, methyl-depleted
- GSM455534 iPS 1 input, methyl-depleted
- GSM455535 Fibroblast 2 input, methyl-depleted
- GSM455536 iPS 2 input, methyl-depleted
- GSM455537 Fibroblast 3 input, methyl-depleted
- GSM455538 iPS 3 input, methyl-depleted
- GSM455539 Fibroblast 4 input, methyl-depleted
- GSM455540 iPS 4 input, methyl-depleted
- GSM610948 fibroblast 1 input, methyl-depleted [JDM]
- GSM610949 iPS 1 input, methyl-depleted [JDM.iPS10]
- GSM610950 iPS 2 input, methyl-depleted [ADA-iPS3]
- GSM610951 fibroblast 2 input, methyl-depleted [hFib2]
- GSM610952 iPS 3 input, methyl-depleted [hFib2-iPS5]
- GSM610953 ES 1 input, methyl-depleted [BGO1]
- GSM610954 ES 2 input, methyl-depleted [BGO3]
- GSM610955 ES 3 input, methyl-depleted [H9]
- GSE224698 Gene expression profiles of human dermal fibroblasts and human pluripotent stem cells analyzed by bulk RNA-seq 69 samples shares fibroblasts
- GSE246236 Reprograming human fibroblasts into Sertoli cells: a tool for personalized medicine 41 samples shares fibroblasts
- GSE275647 Role of Cancer-Associated Fibroblasts in Prognostic Stratification of Advanced-Stage Gastric Cancer through Interacting with Endothelial and Malignant Epithelial Cells [AGC RNA-seq] 216 samples shares fibroblasts
- GSE297400 Transcriptome Profiling of Human Dermal Fibroblasts Treated with 4 Phosphodiesterase Inhibitors Across Multiple Dose Gradients 199 samples shares fibroblasts
- GSE216842 Transcriptomic landscape of human primary stromal cells (fibroblasts, endothelial cells and mesenchymal stem cells) upon therapy-induced senescence (genotoxic chemotherapy） 24 samples shares fibroblasts
- GSE331144 Transcriptional and spatial profiling of fibroblasts from human lungs highlights CTHRC1+ cells as fibrogenic signaling hubs in fibrosis 9 samples shares fibroblasts
- GSE280114 Bulk RNA-seq data of orbital fibroblasts and peripheral blood mononuclear cells (PBMCs) from thyroid eye disease patients 59 samples shares fibroblasts
- GSE327840 RNA-seq profiling of LPS tolerance in monocytes, THP-1, fibroblasts, smooth muscle cells, and endothelial cells 58 samples shares fibroblasts
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.