RNA sequencing analysis of postmortem human Brodmann Area 9 in the University of Texas Health Science Center at Houston Brain Collection
RNA-seq (gene expression) · human · 41 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 41 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE182321_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA755746 and SRA study SRP332964. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 41 more — browse all 41 samples with per-sample file links →
- GSE221515 Small RNA sequencing of postmortem human Brodmann Area 9 and postmortem human blood from Opioid Use Disorder Subjects and Controls in the University of Texas Health Science Center at Houston Brain Collection 65 samples shares postmortem, university, collection, brodmann, science, houston, health, center
- GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University 21 samples shares university, health
- GSE272624 ALS molecular subtypes are a combination of cellular and pathological features learned by deep multiomics classifiers (postmortem cortex) 289 samples shares postmortem
- GSE272626 ALS molecular subtypes are a combination of cellular and pathological features learned by deep multiomics classifiers (postmortem spinal cord) 266 samples shares postmortem
- GSE272200 Differential gene expression in thalamic postmortem tissue of subjects with obsessive compulsive disorder 85 samples shares postmortem
- GSE242315 Gene expression of hepatocellular carcinoma tissue in China Medical University Hospital (CMUH) cohort of Taiwanese patients 71 samples shares university
- GSE87194 Schizophrenia: postmortem dorsal lateral prefrontal cortex (DLPFC) 38 samples shares postmortem
- GSE182917 Postmortem high-dimensional immune profiling of severe COVID-19 patients reveals distinct patterns of immunosuppression and immunoactivation [RNA-seq] 24 samples shares postmortem
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.