AOS10-FMT could rescure the adverse effects induced by STZ on the testis
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE184025_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA762870 and SRA study SRP336835. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5576100 exp_TA-1 exp_TA
- GSM5576101 exp_TA-2 exp_TA
- GSM5576102 exp_TA-3 exp_TA
- GSM5576103 exp_Tcon-1 exp_Tcon
- GSM5576104 exp_Tcon-2 exp_Tcon
- GSM5576105 exp_Tcon-3 exp_Tcon
- GSM5576106 exp_TS-1 exp_TS
- GSM5576107 exp_TS-2 exp_TS
- GSM5576108 exp_TS-3 exp_TS
- GSM5576109 exp_TSA-1 exp_TSA
- GSM5576110 exp_TSA-2 exp_TSA
- GSM5576111 exp_TSA-3 exp_TSA
- GSM5576112 exp_TSAF-1 exp_TSAF
- GSM5576113 exp_TSAF-2 exp_TSAF
- GSM5576114 exp_TSAF-3 exp_TSAF
- GSM5576115 exp_TSCF-1 exp_TSCF
- GSM5576116 exp_TSCF-2 exp_TSCF
- GSM5576117 exp_TSCF-3 exp_TSCF
- GSE179100 AOS10-FMT could rescure the adverse effects induced by high fat diet & STZ on the testis [testis_RNA-seq] 18 samples shares aos10-fmt, stz, rescure, adverse, induced, testis, could
- GSE179097 AOS10-FMT could rescure the adverse effects induced by high fat diet & STZ on the kidney [kidney_RNA-seq] 18 samples shares aos10-fmt, stz, rescure, adverse, induced, could
- GSE180827 AOS10-FMT could rescure the adverse effects induced by STZ on the kidney 18 samples shares aos10-fmt, stz, rescure, adverse, induced, could
- GSE179099 AOS10-FMT could rescure the adverse effects induced by high fat diet & STZ on the Spleen [spleen_RNA-seq] 18 samples shares aos10-fmt, stz, rescure, adverse, induced, could
- GSE175911 AOS10-FMT could rescure the adverse effects induced by high fat diet on the testis 18 samples shares aos10-fmt, rescure, adverse, induced, testis, could
- GSE173566 AOS10-FMT could rescure the adverse effects induced by high fat diet on the kidney 18 samples shares aos10-fmt, rescure, adverse, induced, could
- GSE176110 AOS10-FMT could rescure the adverse effects induced by high fat diet on the Spleen 18 samples shares aos10-fmt, rescure, adverse, induced, could
- GSE184789 L.J. could rescure the adverse effects induced by busulfan on the testis 12 samples shares rescure, adverse, induced, testis, could
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.