Transcriptomic Profiling on Kidneys of Mice after Cecal Ligation and Puncture (CLP) Compared to Sham Operation
RNA-seq (gene expression) · mouse · 5 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 5 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE186822_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA776247 and SRA study SRP343747. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 5 more — browse all 5 samples with per-sample file links →
- GSE275526 snRNA sequencing on the kidney tissue of cecal ligation and puncture (CLP) and Sham mice. 6 samples shares clp, ligation, puncture, cecal, sham
- GSE275740 snRNA sequencing on the wat tissue of cecal ligation and puncture (CLP) and Sham mice. 6 samples shares clp, ligation, puncture, cecal, sham
- GSE275479 snRNA sequencing on the brain tissue of cecal ligation and puncture (CLP) and Sham mice. 6 samples shares clp, ligation, puncture, cecal, sham
- GSE275689 snRNA sequencing on the liver tissue of cecal ligation and puncture (CLP) and sham mice 6 samples shares clp, ligation, puncture, cecal, sham
- GSE298053 Single cell RNA sequencing of control and cecal ligation-and puncture mouse kidneys 2 samples shares ligation, puncture, kidneys, cecal
- GSE260635 A critical role for Hepatocyte Nuclear Factor 4 alpha in polymicrobial sepsis-associated metabolic reprogramming and death: effect of CLP/SHAM in Hnf4a WT and KO mice 16 samples shares clp, sham
- GSE319754 RXRα Suppression Drives Hepatic Metabolic and Immune Dysfunction in Sepsis: Gene induction by BEX in Sham & CLP (8h) 12 samples shares clp, sham
- GSE319852 RXRα Suppression Drives Hepatic Metabolic and Immune Dysfunction in Sepsis: RXRα KO in CLP/SHAM 12 samples shares clp, sham
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.