Next Generation Sequencing of Transcriptomes from Murine Articular Chondrocytes Treated with TGFb1 and BMP2
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 22 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 22 samples: 9 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- NFIA regulates articular chondrocyte fatty acid metabolism and joint homeostasisScience translational medicine · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE188327_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA778262. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 22 samples.
How we read this: 9 replicated groups read from 22 sample titles; they account for 22 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5199761 ATAC-seq BMP2 replicate 1 ATAC-seq BMP2
- GSM5199762 ATAC-seq BMP2 replicate 2 ATAC-seq BMP2
- GSM5199763 ATAC-seq TGFb replicate 1 ATAC-seq TGFb
- GSM5199764 ATAC-seq TGFb replicate 2 ATAC-seq TGFb
- GSM5199765 ATAC-seq Vehicle replicate 1 ATAC-seq Vehicle
- GSM5199766 ATAC-seq Vehicle replicate 2 ATAC-seq Vehicle
- GSM5201244 RNA-seq BMP2 replicate 1 RNA-seq BMP2
- GSM5201245 RNA-seq BMP2 replicate 2 RNA-seq BMP2
- GSM5201246 RNA-seq BMP2 replicate 3 RNA-seq BMP2
- GSM5201248 RNA-seq TGFb replicate 1 RNA-seq TGFb
- GSM5201249 RNA-seq TGFb replicate 3 RNA-seq TGFb
- GSM5201250 RNA-seq Vehicle replicate 1 RNA-seq Vehicle
- GSM5201251 RNA-seq Vehicle replicate 2 RNA-seq Vehicle
- GSM5677848 MRE-seq BMP2 replicate 1 MRE-seq BMP2
- GSM5677849 MRE-seq BMP2 replicate 2 MRE-seq BMP2
- GSM5677850 MRE-seq BMP2 replicate 3 MRE-seq BMP2
- GSM5677851 MRE-seq TGFb replicate 1 MRE-seq TGFb
- GSM5677852 MRE-seq TGFb replicate 2 MRE-seq TGFb
- GSM5677853 MRE-seq TGFb replicate 3 MRE-seq TGFb
- GSM5677854 MRE-seq Vehicle replicate 1 MRE-seq Vehicle
- GSM5677855 MRE-seq Vehicle replicate 2 MRE-seq Vehicle
- GSM5677856 MRE-seq Vehicle replicate 3 MRE-seq Vehicle
- GSE169380 ATAC Sequencing of Murine Articular Chondrocytes Treated with TGFb1 and BMP2 6 samples shares tgfb1, bmp2, chondrocytes, articular, treated
- GSE224575 Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and FAD4T thyroid Transcriptomes，Young and Aging thyroid Transcriptomes 30 samples shares transcriptomes, generation, next
- GSE252087 Next Generation Sequencing Facilitates Quantitative Analysis of WT and GSH or Ctrl and Cas9 mouse breast cancer cells Transcriptomes 12 samples shares transcriptomes, generation, next
- GSE169312 Next-generation sequencing Facilitates Quantitative Analysis of Wild Type and EED-/- mice cerebellum Transcriptomes and Genome-wide maps of chromatin state in Wild Type and EED-/- mice cerebellum 12 samples shares transcriptomes, generation, next
- GSE168110 Next generation sequencing facilliates quantitative analysis of Wild type and KitW/Wv Smooth muscle cells transcriptomes 10 samples shares transcriptomes, generation, next
- GSE278201 Next Generation Sequencing Facilitates Quantitative Analysis of BALB/C mice triple-negative breast cancer Transcriptomes 10 samples shares transcriptomes, generation, next
- GSE274901 Next Generation Sequencing of BAT Transcriptomes in young and aged mice 10 samples shares transcriptomes, generation, next
- GSE296880 Next Generation Sequencing Facilitates Quantitative Analysis of the murine macrophage cell line RAW264.7 Transcriptomes 9 samples shares transcriptomes, generation, next
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.