mRNA, lncRNA and circular RNA expression profiles and ceRNA network construction of granulosa cells in ovarian endometriosis
Non-coding RNA profiling · human · 10 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 10 samples: 5 × Control, vs 5 × EM,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE192636_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA792550 and SRA study SRP352556. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 10 samples.
How we read this: 2 replicated groups read from 10 sample titles; they account for 10 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5753640 Control, 1 Control,
- GSM5753641 Control, 2 Control,
- GSM5753642 Control, 3 Control,
- GSM5753643 Control, 4 Control,
- GSM5753644 Control, 5 Control,
- GSM5753645 EM, 1 EM,
- GSM5753646 EM, 2 EM,
- GSM5753647 EM, 3 EM,
- GSM5753648 EM, 4 EM,
- GSM5753649 EM, 5 EM,
- GSE193136 Long noncoding RNAs expression profiles in granulosa of woman with diminished ovarian reserve based on high-throughput sequencing 12 samples shares granulosa, profiles, ovarian
- GSE268499 Construction of a ceRNA network and screening of potential biomarkers and molecular targets in male smokers with chronic obstructive pulmonary disease 10 samples shares construction, network
- GSE286918 Metabolic reprogramming and ferroptosis occurring in granulosa cells from patients with diminished ovarian reserve 116 samples shares granulosa, ovarian
- GSE276193 Integrative Single-Cell Analysis Reveals Iron Overload-Induced Senescence and Metabolic Reprogramming in Ovarian Endometriosis-Associated Infertility 18 samples shares endometriosis, ovarian
- GSE299799 A deep learning framework for the reconstruction of gene expression profiles derived from formalin-fixed paraffin-embedded samples 12 samples shares construction, profiles
- GSE281569 Mechanism of quercetin in the treatment of endometriosis based on network pharmacology and transcriptome sequencing 12 samples shares endometriosis, network
- GSE282532 Transcriptomic changes in paired eutopic and ectopic endometrium of ovarian endometriosis 10 samples shares endometriosis, ovarian
- GSE97239 High-throughput RNA sequencing on circular RNA profiles of human bladder cancer tissues and normal bladder tissues 6 samples shares circular, profiles
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.