mRNA Seqeuencing of MCAO and trat pons after stroke [bulk RNA-seq]
RNA-seq (gene expression) · rat · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Rattus norvegicus (rat)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE199066_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA818274 and SRA study SRP365060. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE250245 Single nucleus transcriptome of the brains response to ischemic stroke 6 samples shares stroke, pons
- GSE275999 Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis [snRNA-seq] 6 samples shares rna-seq
- GSE288168 RNA-Seq of doxorubicin treated rats and vehicle control 6 samples shares rna-seq
- GSE326856 Single-cell RNA-seq profiles of intestinal mucosa in IBS-D rats to explore the mechanism of immune barrier regulation in pathogenesis 4 samples shares rna-seq
- GSE232936 Gene expression profiles of endothelium, microglia and oligodendrocytes in hippocampus of post-stroke depression rat at single cell resolution 4 samples shares stroke
- GSE322512 Engrailed-1 Potentiates Mitochondrial Transplant Neuroprotection in Spinal Cord Ischemia-Reperfusion Injury [RNA-Seq] 2 samples shares rna-seq
- GSE192803 RNA-seq analysis of ipsilateral rat TGs on day 14 after CCI-ION or sham operation 6 samples shares rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.