High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [ATAC-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 1 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE202037_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA834079. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE281462 Dissecting Non-Coding GWAS Loci with High-Resolution 3D Chromatin Interactions Reveals Causal Genes with Relevance to Heart Failure [ATAC-seq] 4 samples shares high-resolution, atac-seq
- GSE337533 A Single-Cell Atlas of Transcriptional and Immunoglobulin Repertoire Evolution in Early B Cell Development 66 samples shares immunoglobulin, transcription
- GSE36001 Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma [gene expression] 25 samples shares relationships, epigenetic
- GSE288996 Simultaneous single cell CRISPR, RNA, and ATAC-seq enables multiomic CRISPR screens to identify gene regulatory relationships 15 samples shares relationships, atac-seq
- GSE293230 Intravenous immunoglobulin has epigenetic, ribosomal, and immune effects in Paediatric Acute-Onset Neuropsychiatric syndrome 14 samples shares immunoglobulin, epigenetic
- GSE260944 Mutability and hypermutation antagonize immunoglobulin codon optimality; Analysis of human MLN B cells. 14 samples shares immunoglobulin, hypermutation
- GSE260943 Mutability and hypermutation antagonize immunoglobulin codon optimality; Analysis of human tonsil B cells. 6 samples shares immunoglobulin, hypermutation
- GSE301798 Killer cell immunoglobulin-like receptors delineate distinct phenotypes and functions in human γδ T cells [ATAC] 14 samples shares immunoglobulin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.