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Single-cell transcriptomics of mouse knee joints during embryonic and postnatal stages

GSE206303 Mus musculus Expression profiling by high throughput sequencing 6 samples Submitted 2025/06/10 Platform GPL24247
Summary
Synovial joints are structures where two bones meet and essential for mobility. For example, knee joints allow flexion and extension in a single plan for stable walking motions, whereas phalangeal joints together with skeletal muscles facilitate fine motor movements in hands. Joint is enclosed in a capsule and lined by a synovial membrane inside. Articular cartilage covering bone surfaces provide a wear-resistant structure that reduces friction during movement. Meniscus acts like a shock absorber to avoid direct grinding between bone surfaces. Cruciate ligaments reinforce the integrity of a joint by mounting two bones in place and limit the degree of joint movement. All these complex structures with different shapes are fit within the joint capsule for purpose. We established lineage maps of individual joint lineages for human and mouse to understand the progenitors, transcriptional regulators, signaling cues and extracellular matrix (ECM) involved in each differentiation trajectory. We asked whether LGR5+ joint progenitor cells are presence in early stage and decline with maturation as in our findings of mouse, and whether LGR5 and COL22A1 demarcate the chondrogenic and ligamentogenic lineages in human.
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Direct links to NCBI, no account and no request form: the whole study as GSE206303_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA849985 and SRA study SRP382101. Searching any of these in the dataset finder brings you back here.

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