Effect of KHSRP acetylation on gene expression in LNCaP cells
Non-coding RNA profiling · human · 24 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 24 samples: 3 × LNCaPsh_UT vs 3 × LNCaPVECTO vs 3 × LNCaPHA_WT vs 3 × LNCaPHA_K205Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE206486_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA851059 and SRA study SRP382726. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 24 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6255224 LNCaPsh_UTR_1 LNCaPsh_UT
- GSM6255225 LNCaPsh_UTR_2 LNCaPsh_UT
- GSM6255226 LNCaPsh_UTR_3 LNCaPsh_UT
- GSM6255227 LNCaPVECTOR_1 LNCaPVECTO
- GSM6255228 LNCaPVECTOR_2 LNCaPVECTO
- GSM6255229 LNCaPVECTOR_3 LNCaPVECTO
- GSM6255230 LNCaPHA_WT_1 LNCaPHA_WT
- GSM6255231 LNCaPHA_WT_2 LNCaPHA_WT
- GSM6255232 LNCaPHA_WT_3 LNCaPHA_WT
- GSM6255233 LNCaPHA_K205R_1 LNCaPHA_K205
- GSM6255234 LNCaPHA_K205R_2 LNCaPHA_K205
- GSM6255235 LNCaPHA_K205R_3 LNCaPHA_K205
- GSM6255236 LNCaPHA-WT-1-micro
- GSM6255237 LNCaPHA-WT-2-micro
- GSM6255238 LNCaPHA-WT-3-micro
- GSM6255239 LNCaPsh-UTR-1-micro
- GSM6255240 LNCaPsh-UTR-2-micro
- GSM6255241 LNCaPsh-UTR-3-micro
- GSM6255242 LNCaPVECTOR-1-micro
- GSM6255243 LNCaPVECTOR-2-micro
- GSM6255244 LNCaPVECTOR-3-micro
- GSM6255245 LNCaPHA-K205R-1-micro
- GSM6255246 LNCaPHA-K205R-2-micro
- GSM6255247 LNCaPHA-K205R-3-micro
- GSE229230 Targeting novel m6A reader KHSRP impairs pancreatic ductal adenocarcinoma progression via attenuating FAK signaling 31 samples shares khsrp
- GSE301872 Therapy-persistent leukemia is selectively vulnerable to SLC23A1 restoration via targeting KHSRP (PDX samples from different disease statuses) 15 samples shares khsrp
- GSE337663 Therapy-persistent leukemia is selectively vulnerable to SLC23A1 restoration via targeting KHSRP (AML patient samples) 8 samples shares khsrp
- GSE240167 Effects of CDK8/19 Mediator Kinase inhibition by Senexin B and SNX631 on androgen-regulated gene expression in LNCaP cells 28 samples shares lncap
- GSE227987 Gene expression profiling of LNCaP, LNCap-abl and 22Rv1 cells following transfection with toxic siRNAs (siGUGUGUA, siUGUUUGC), siAR or non-target control as indicated 45 samples shares lncap
- GSE264062 Gene expression changes of CRISPR/Cas13d-mediated HoxB13 knockdown in 293FT cells and LNCaP95 mouse liver metastasis 14 samples shares lncap
- GSE299618 CBP-IDRs regulate acetylation and gene expression 46 samples shares acetylation
- GSE299613 CBP-IDRs regulate acetylation and gene expression [CUT&Run] 24 samples shares acetylation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.