Transcriptome of human peripheral blood regulatory T cells with distinct ex vivo expansion profile
RNA-seq (gene expression) · human · 19 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 19 samples: 8 × ARTEMIS # vs 6 × Post-KTx # vs 3 × T1D # vs 2 × Pre-KTx #Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Selective decrease of donor-reactive T(regs) after liver transplantation limits T(reg) therapy for promoting allograft tolerance in humansScience translational medicine · 2022
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE208111_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA858412 and SRA study SRP386240. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 19 samples.
How we read this: 4 replicated groups read from 19 sample titles; they account for 19 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6337465 Post-KTx #4 Post-KTx #
- GSM6337466 T1D #3 T1D #
- GSM6337467 T1D #4 T1D #
- GSM6337468 ARTEMIS #7 ARTEMIS #
- GSM6337469 ARTEMIS #8 ARTEMIS #
- GSM6337470 Pre-KTx #1 Pre-KTx #
- GSM6337471 Post-KTx #2 Post-KTx #
- GSM6337472 ARTEMIS #10 ARTEMIS #
- GSM6337473 Post-KTx #3 Post-KTx #
- GSM6337474 T1D #2 T1D #
- GSM6337475 ARTEMIS #4 ARTEMIS #
- GSM6337476 ARTEMIS #3 ARTEMIS #
- GSM6337477 Pre-KTx #2 Pre-KTx #
- GSM6337478 Post-KTx #6 Post-KTx #
- GSM6337479 Post-KTx #1 Post-KTx #
- GSM6337480 Post-KTx #5 Post-KTx #
- GSM6337481 ARTEMIS #5 ARTEMIS #
- GSM6337482 ARTEMIS #2 ARTEMIS #
- GSM6337483 ARTEMIS #6 ARTEMIS #
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.