Robust methylation based classification of brain tumors using nanopore sequencing
DNA methylation · human · 415 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 415 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE209865_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA862740. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 415 more — browse all 415 samples with per-sample file links →
- GSE73801 DNA methylation data from CNS-PNETs and various other brain tumor samples 593 samples shares methylation, brain
- GSE67749 Frontal lobe (brain) Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects 33 samples shares methylation, brain
- GSE272142 Genome‑wideBrain DNAMethylationandGeneExpression Patterns Unravel Epigenetic Reprogramming in Mesial Temporal Lobe Epilepsy 12 samples shares methylation, brain
- GSE65362 Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups. 562 samples shares classification
- GSE93646 Microarray-based DNA methylation profiles of primary medulloblastomas 428 samples shares methylation
- GSE256353 Upregulated cholesterol biosynthesis facilitates the survival of methylation-retaining AML cells following decitabine treatment [single_colony_TEM-Seq] 1728 samples shares methylation
- GSE210995 HKU Gastric Intestinal Metaplasia study: Single-cell RNA sequencing, transcriptome and methylation profiling 199 samples shares methylation
- GSE285190 A Transcriptome-based Molecular Classification Scheme for Thyroid Eye Disease 195 samples shares classification
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.